Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32151
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 1.7
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 1.7
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 27 2.2
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 2.9
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 3.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 26 3.8
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 5.1
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 6.7
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.9
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 8.9
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.9
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 326 HFNRVVQLYYGTYLFHHVHMYI 261
HF R +Y TY+FH++ +I
Sbjct: 643 HFYRSTMFFYMTYVFHYLPFFI 664
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 251 FCSFNAVYLWPC 216
F SF A+YLWPC
Sbjct: 35 FISFLAIYLWPC 46
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 445 PRLTFQNSLLEKSKFFFRYAVYLVRYSI---FLLFKIKN 338
P L + +S + F+RY YL+ I F+L+K+ +
Sbjct: 92 PSLVYPSSSFSSTSKFWRYFAYLLSLQIVIDFVLYKLSS 130
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 215 SKYPPCVSFLINEHIIWHVVIELSLLAPEL 126
SKY P FL+ HI+W +L L P L
Sbjct: 119 SKYNPSRQFLLRVHIMWTTGGDLPLSNPVL 148
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -3
Query: 439 LTFQNSLLEKSKFFFRYAVYLVRYSIFLLFKIKNLVLF 326
L F+ L + S+F R+ ++ + +I +LF +LV+F
Sbjct: 375 LAFRFRLKKASQFDTRWNLFALTLAIIILFAFNDLVIF 412
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 3.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 233 VYLWPCSKYPPCVSFLINEH 174
+++W S+ PP F IN+H
Sbjct: 163 IFVWDVSRKPPLQLFTINQH 182
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 13 YKIIFNGMTVLFKLECPNRPFIKSFLGSFKLHHFVNQPSSGAKSDNSITTC 165
++ F G ++ F E P+I S L +F L + +PSSGA S I C
Sbjct: 79 FQWFFWGYSLTFSHE--GGPYIGS-LANFGLRQTLGRPSSGASSVPDILFC 126
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/39 (30%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -3
Query: 382 YLVRYSIF-LLFKIKNLVLFILTESSNSITEHTYSITYI 269
+L R+S F ++F+I +++FI++ +++S +E + +YI
Sbjct: 194 FLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYI 232
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 288 VCSVIELDDSVKMNSTKFFILNSR-NILYLTRYT 386
+C+ +D+ K N T + +LN++ N + T YT
Sbjct: 135 ICNFNMANDASKENETPYMVLNNKFNPVLTTEYT 168
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 145 DNSITTCHIICSFIKKDTQGGYL 213
DN+ITT + + I+K+ +G YL
Sbjct: 85 DNNITTGKVYSNVIQKERRGDYL 107
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 409 SKFFFRYAVYLVRYSIFLLFKIK-----NLVLFIL 320
S+ F R +YL+ YS+F L +I NL +F++
Sbjct: 102 SEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLV 136
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 203 VDIWNRAISIQR*SYKNTHLCTYVRD 280
VDI N + S ++ HLC+Y+R+
Sbjct: 4426 VDISNNFFQLGMDSIRSIHLCSYLRN 4451
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 409 SKFFFRYAVYLVRYSIFLLFKIK-----NLVLFIL 320
S+ F R +YL+ YS+F L +I NL +F++
Sbjct: 102 SEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLV 136
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 409 SKFFFRYAVYLVRYSIFLLFKIK-----NLVLFIL 320
S+ F R +YL+ YS+F L +I NL +F++
Sbjct: 102 SEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLV 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,810
Number of Sequences: 5004
Number of extensions: 48118
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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