Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32151
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1235 + 28593906-28594412,28594670-28594756,28594890-285950...    29   2.9  
01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528...    29   2.9  
01_05_0123 - 18371072-18371293,18371596-18371835,18372226-183722...    27   6.8  

>06_03_1235 +
           28593906-28594412,28594670-28594756,28594890-28595027,
           28595752-28595771,28595772-28595967,28596104-28596168,
           28596299-28596404
          Length = 372

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 234 SVKATKTRIYVHMYVME*VCSVIELDDSVKMNSTKFFILNSRNILYLTRYTAYLKK 401
           SVKAT+  +Y    +++  C  I  DD +   + +FF + SR    L     +L++
Sbjct: 211 SVKATELNLYEDA-ILDACCHNIPADDELWYRAVEFFCIGSRYDRMLAEMLGHLER 265


>01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,
            5288913-5289060,5289537-5289696,5290021-5290166,
            5290963-5291191,5291901-5292123,5292253-5292401,
            5293501-5293670,5294188-5294259,5294363-5294443,
            5296180-5296311,5296381-5296468,5296841-5297054,
            5297501-5297684,5298069-5298152,5299002-5299131,
            5299280-5299650,5299684-5299967,5300932-5301247
          Length = 1233

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 139  KSDNSITTCHIICSFIKKDTQGGYLEQGHKYTALKLQKHASM 264
            + D ++ +  ++   IKKD +    + GHKY +L + K  SM
Sbjct: 1180 EGDTALCSLPLLRKIIKKDHRSVQCDNGHKYASLLVCKMDSM 1221


>01_05_0123 -
           18371072-18371293,18371596-18371835,18372226-18372235,
           18372363-18372406
          Length = 171

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 288 VCSVIELDDSVKMNSTKFFILNSRNILYLT 377
           V  V EL+D + ++  + +++NS  ++YLT
Sbjct: 27  VVKVSELEDILDISDVQTYVINSSRVVYLT 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,334
Number of Sequences: 37544
Number of extensions: 250881
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)