Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32151
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51805| Best HMM Match : DUF755 (HMM E-Value=6.8)                    27   9.2  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         27   9.2  

>SB_51805| Best HMM Match : DUF755 (HMM E-Value=6.8)
          Length = 369

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 106 HHFVNQPSSGAKSDNSITTCHIICSFIKKDTQ-GGYLEQGHKYTALKLQKHASMYICT 276
           HH   QPS    ++N+    H   S    DT   GY++Q   +     ++H SM+ CT
Sbjct: 140 HHPTIQPSGDRVTENTSLAKHTSSS----DTPCSGYIKQVEDFIQGIQRRHLSMFECT 193


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 233 VYLWPCSKYPPCVSFLINEHIIWHVVIELSLLAPELG*LTKWC 105
           VY WP +K     SFL+   ++   ++ ++ L  E   L  +C
Sbjct: 378 VYTWPLNKVGEVGSFLLESALVCFPILMVAFLVSEQDFLPVYC 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,530
Number of Sequences: 59808
Number of extensions: 323753
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)