Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32151
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04370.1 68416.m00462 hypothetical protein contains Pfam prof...    31   0.61 
At3g28840.1 68416.m03598 expressed protein                             29   2.5  
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    27   7.5  
At2g33510.1 68415.m04108 expressed protein                             27   9.9  

>At3g04370.1 68416.m00462 hypothetical protein contains Pfam profile
           PF01657: Domain of unknown function
          Length = 332

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 163 CHIICSFIKKDTQGGYLEQGHKYTALKLQKHASMY-IC 273
           CH+I  F + DT G  +   HKY   +  +H  ++ IC
Sbjct: 140 CHLIYKFERIDTPGAQVNNHHKYKLFETPEHGLIHKIC 177


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 43  LFKLECPNRPFIKSFLGSFKLH-HFVNQPSSGAKS 144
           + +L+CP +P  KSF G+ + + +F+N  +SG+K+
Sbjct: 56  VLELKCPLKPQYKSFFGNLRSYMNFINS-ASGSKN 89


>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 HHFVNQPSSGAKSDNSITTCHII 174
           HH +  P++GA SD+S+   H++
Sbjct: 130 HHSIFSPATGAVSDSSLKFTHVL 152


>At2g33510.1 68415.m04108 expressed protein
          Length = 189

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 107 CNLNDPKKLLIKGLFGHSSLNKTVIPLN 24
           C+LND ++ ++   FG SS N+ + P++
Sbjct: 20  CSLNDRRRRVVGDGFGRSSSNEHMTPIS 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,875,435
Number of Sequences: 28952
Number of extensions: 222242
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)