Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32145
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   2.3  
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              27   6.9  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 340 DTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGK 483
           D +++  K    +  +LE +   L+  +KRKD+ I+DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 391  EDEKFX--LEYIVKRKDMEISDLNSQVNDLRGKFVK 492
            ++EKF   L  ++ RKD  I +LN+++  L+G + K
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK 1032



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 298  ERCGKPKNIDDANED---TIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVN 468
            ER G   + + A ED   T+KR    Y E+I+RLE     ++   K    EI++L  QV 
Sbjct: 2461 ERAGGHSDSNRALEDRMNTLKREIVTYQEKISRLEVNYENIKERNKDLKDEIAELMIQVK 2520

Query: 469  DLR 477
            + +
Sbjct: 2521 EAK 2523


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 337 EDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQV 465
           ED + R  +   +RI RLE     L+ + +R     SD+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +1

Query: 328 DANEDTIKRVCKDYHERIARLEDE 399
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +1

Query: 331  ANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGKFVK 492
            A+++ I+   +    ++++++DE   L+    R+  EI DL +++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,987
Number of Sequences: 59808
Number of extensions: 136076
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)