Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32145
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 88 3e-18
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 88 3e-18
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 78 4e-15
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 78 4e-15
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 78 4e-15
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 78 4e-15
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 72 2e-13
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 72 2e-13
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 37 0.010
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 35 0.030
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 35 0.030
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 33 0.16
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 33 0.16
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 31 0.37
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 31 0.65
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 31 0.65
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical ... 28 4.6
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 27 6.0
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 27 6.0
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 27 6.0
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 27 6.0
AL031620-5|CAA20926.1| 277|Caenorhabditis elegans Hypothetical ... 27 6.0
Z83122-1|CAB05597.1| 293|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 27 8.0
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 88.2 bits (209), Expect = 3e-18
Identities = 51/132 (38%), Positives = 68/132 (51%)
Frame = +1
Query: 115 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXII 294
+RK+ EVRKR+EEAS GF+TP I+
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 295 XERCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDL 474
ER ++D NED ++ V + ER+ LE E + + YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 475 RGKFVKPTLKTV 510
RGKFVKPTLK V
Sbjct: 134 RGKFVKPTLKKV 145
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 88.2 bits (209), Expect = 3e-18
Identities = 51/132 (38%), Positives = 68/132 (51%)
Frame = +1
Query: 115 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXII 294
+RK+ EVRKR+EEAS GF+TP I+
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 295 XERCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDL 474
ER ++D NED ++ V + ER+ LE E + + YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 475 RGKFVKPTLKTV 510
RGKFVKPTLK V
Sbjct: 134 RGKFVKPTLKKV 145
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 77.8 bits (183), Expect = 4e-15
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 121 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIXE 300
K+AEVRKRMEEA+ GF+TP + +
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 301 RCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLR 477
R ++D N+ + ++ +D R+ LE+EKF + + V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 478 GKFVKPTLKTV 510
GKFVKPTLK V
Sbjct: 151 GKFVKPTLKKV 161
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 77.8 bits (183), Expect = 4e-15
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +1
Query: 115 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXII 294
+ K+AEVRKR+EEA GF+TP +
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 295 XERCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVND 471
+R N+D ++ ++++ D R+ +LE+EK+ + Y+V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 472 LRGKFVKPTLKTV 510
LRGKFVKP+LK V
Sbjct: 137 LRGKFVKPSLKKV 149
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 77.8 bits (183), Expect = 4e-15
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 121 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIXE 300
K+AEVRKRMEEA+ GF+TP + +
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 301 RCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLR 477
R ++D N+ + ++ +D R+ LE+EKF + + V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 478 GKFVKPTLKTV 510
GKFVKPTLK V
Sbjct: 151 GKFVKPTLKKV 161
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 77.8 bits (183), Expect = 4e-15
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +1
Query: 115 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXII 294
+ K+AEVRKR+EEA GF+TP +
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 295 XERCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVND 471
+R N+D ++ ++++ D R+ +LE+EK+ + Y+V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 472 LRGKFVKPTLKTV 510
LRGKFVKP+LK V
Sbjct: 137 LRGKFVKPSLKKV 149
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 72.1 bits (169), Expect = 2e-13
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Frame = +1
Query: 115 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXII 294
+ K+AEVRKR+EEA GF+TP ++
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 295 XERCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVND 471
ER N+D ++ ++ + D R+ LE+EK+ + +I + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 472 LRGKFVKPTLKTV 510
LRGKFVKP+LK V
Sbjct: 149 LRGKFVKPSLKKV 161
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 72.1 bits (169), Expect = 2e-13
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Frame = +1
Query: 115 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXII 294
+ K+AEVRKR+EEA GF+TP ++
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 295 XERCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVND 471
ER N+D ++ ++ + D R+ LE+EK+ + +I + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 472 LRGKFVKPTLKTV 510
LRGKFVKP+LK V
Sbjct: 149 LRGKFVKPSLKKV 161
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 319 NIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQ 462
N + + +K K+ H+RI +LE EK+ LE +R++ ++ +LN +
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNER 1090
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 35.1 bits (77), Expect = 0.030
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 310 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDL-RGKF 486
K +++ + +K K H RI +LE EK+ LE +R++ ++ +LN + + R K
Sbjct: 125 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 184
Query: 487 VKPTL 501
+K L
Sbjct: 185 LKKGL 189
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 35.1 bits (77), Expect = 0.030
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 310 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDL-RGKF 486
K +++ + +K K H RI +LE EK+ LE +R++ ++ +LN + + R K
Sbjct: 229 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 288
Query: 487 VKPTL 501
+K L
Sbjct: 289 LKKGL 293
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 346 IKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQ 462
+K K+ H+RI +LE +K+ LE +R++ ++ +LN +
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 346 IKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQ 462
+K K+ H+RI +LE +K+ LE +R++ ++ +LN +
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.37
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 319 NIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDL 453
N + + +K K+ H+RI +LE EK+ LE +R++ + L
Sbjct: 209 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDPKQL 253
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 346 IKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNS-QVNDLRGKFVKPTL 501
+K + H RI +LE EK+ LE +R+D ++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 346 IKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNS-QVNDLRGKFVKPTL 501
+K + H RI +LE EK+ LE +R+D ++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 373 ERIARLEDEKFXLEYIVKRKDMEISDLNSQVND 471
E I L K E ++K+KD+E+S + S++ D
Sbjct: 1074 ELIEELNRHKHEQEQVIKKKDIELSSIQSRLED 1106
>AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical
protein T23B12.5 protein.
Length = 224
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 491 LTNLPLRSLTWEFRSEISISFLLTMYSRXNFXXXXXXXXXXXSLQTLLIVSSLASSMFL 315
L NLPL + W F S S+ L + R + L+ L++SS+ ++FL
Sbjct: 39 LLNLPLERIFWNFLSLSSVPLQLFVVLR-QYMLTFSTSNKLQLLRITLVISSVFQTLFL 96
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 DDA--NEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 498
DDA D + + E+ +L+ E + + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 DDA--NEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 498
DDA D + + E+ +L+ E + + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 DDA--NEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 498
DDA D + + E+ +L+ E + + K+ E +DL + ++DLRG F K T
Sbjct: 446 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 505
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 DDA--NEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 498
DDA D + + E+ +L+ E + + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>AL031620-5|CAA20926.1| 277|Caenorhabditis elegans Hypothetical
protein C18B12.5 protein.
Length = 277
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 316 KNIDDANEDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVND-LRGKFVK 492
KN N D K + D+H+ +++ + + LEYI +I + S+ N + GKF
Sbjct: 171 KNASILNLDC-KYLPADFHQHLSKFKHLEIKLEYISNEDIDKIKKMISEPNSIMNGKFKS 229
Query: 493 PT 498
T
Sbjct: 230 ST 231
>Z83122-1|CAB05597.1| 293|Caenorhabditis elegans Hypothetical
protein R11A5.2 protein.
Length = 293
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 358 CKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVN 468
C+ ERI +LE LE + K+ SDL S+++
Sbjct: 98 CESQRERIRKLEQRNDVLETSERNKEYLASDLGSKLD 134
>Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical
protein C33D9.5 protein.
Length = 472
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 343 TIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVN 468
T KR+ + YH I L++ Y +KRK + + + ++N
Sbjct: 200 TTKRLMEHYHIEIDNLKEAHSEEMYKIKRKYSTLEEYSEEIN 241
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +1
Query: 337 EDTIKRVCKDYHERIARLEDEKFXLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKTV 510
ED + R+C+ Y + + R+ + + LEY K K+ + + + + + K + L +
Sbjct: 671 EDVVNRLCESYKKLLVRVAELETELEY-EKEKNRALQETINNSSSVDSKINQEKLNKI 727
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,370,868
Number of Sequences: 27780
Number of extensions: 99824
Number of successful extensions: 502
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -