Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32138
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   2.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   6.7  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.9  

>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   LKQKVIKMALMRRCAPLFARCIKIPPMTLQSQKIHRW 111
           L QKV K  L     P  + CI + P++  S ++HRW
Sbjct: 345 LAQKVEKTVL--DAIPALSSCI-VTPLSSDSNQVHRW 378


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 319 EMGVDIPMKDNMELIAEGEKFINEYVQLYLETVLPKFPLEG--VNEVRNYLTNEDRLAKI 492
           ++GVD P    +  +AE  KF N     Y   V P + L G  ++ +R+  + +D+L   
Sbjct: 753 KIGVDQPAWKELTSVAEASKFANAVG--YPVLVRPSYVLSGAAMSVIRDESSLKDKLENA 810

Query: 493 S 495
           S
Sbjct: 811 S 811


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 217 YAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIAEGEKFIN 387
           Y     L  +F    ++++ TD  YI+ E+M     G+DI   +N ++    +  IN
Sbjct: 245 YPLASILGNDFFKRGVIRSQTD--YIVYEKMHNHTAGLDIAFYENRDIYHTRKDDIN 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,284
Number of Sequences: 5004
Number of extensions: 33224
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)