Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32138
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640...    29   1.7  
03_05_0213 - 22037268-22039496                                         28   5.1  
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    27   8.9  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   8.9  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    27   8.9  

>11_04_0474 +
           18162538-18163731,18163800-18163855,18163951-18164011,
           18164107-18165495,18166024-18166635,18166706-18166852,
           18166941-18167209,18167322-18167412,18167500-18167757,
           18168376-18168450,18168937-18168945
          Length = 1386

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 259 NPSRILHSNVFQKHKVQPPNSIPE 188
           +P RILHSN+ QK+   PP  + +
Sbjct: 915 DPRRILHSNIVQKNDTVPPVGVEQ 938


>03_05_0213 - 22037268-22039496
          Length = 742

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +1

Query: 217 YAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIAEGEKFINEYV 396
           +A G  + EE    L      D   ++  EM+++   V + +  +     EG++  ++ V
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 397 QLYLETVLPKFPLEGVNEVRNYLTN 471
            L L  + P F ++    V N+L N
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLN 154


>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 241 EEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIA-EGEKFINEYVQLYLE 411
           E FD +  +++ + ++  ++E ++ + MGVD+ M+    + A EG    +E V++ +E
Sbjct: 193 EAFDDEGAMKSQSVKSLTVEEVIESQGMGVDVNMQKKEAVDANEGRSQESERVEINVE 250


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 241 EEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIA-EGEKFINEYVQLYLE 411
           E FD +  +++ + ++  ++E ++ + MGVD+ M+    + A EG    +E V++ +E
Sbjct: 365 EAFDDEGAMKSQSVKSLTVEEVIESQGMGVDVNMQKKEAVDANEGRSQESERVEINVE 422


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +1

Query: 232 RLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNMELIAEGEKFINEYVQLYLE 411
           RL ++   D L++A     Y+ + E ++  +  D    +N  L AE E+   EY  L   
Sbjct: 450 RLRKQNIMDSLIEA---PKYLFQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSH 506

Query: 412 TVLPKFPLEGVNEVRNYLTNED 477
               K  LEG ++   Y+  ++
Sbjct: 507 NASLKEKLEGNSDSIPYMNEQN 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,205,882
Number of Sequences: 37544
Number of extensions: 182856
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)