Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32135
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   4.6  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    28   4.6  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    27   8.0  

>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 340 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPTVS 468
           TTT   P T     KK  ++R+  PKT  + +  +T T APT +
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPTTT 238


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 270 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 365
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 270 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 365
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 270 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 365
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 270 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 365
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 334 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 465
           + TTT  +P T  S KK   + T  P  K S+   +T T +P V
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVV 416


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 297 YGIIRY--DNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKV 431
           YGII+   D   AP+G+    +    I    AG ++NV  E+ G+ V
Sbjct: 178 YGIIKALPDGKSAPDGHELTVDYWEVIGKAPAGGIDNVLNESAGVDV 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.124    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,615,539
Number of Sequences: 27780
Number of extensions: 153969
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)