Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32135
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29510.1 68415.m03584 expressed protein                             27   5.7  
At1g73990.1 68414.m08569 peptidase U7 family protein similar to ...    27   7.5  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    27   7.5  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At5g51850.1 68418.m06428 expressed protein similar to unknown pr...    27   9.9  

>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 346 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVS 468
           +C+ PR+R +   P+RSRTL  ++  +  + S    A  +S
Sbjct: 362 SCSAPRSRKAESSPSRSRTLDRRSTETLPKQSDQKPAKVLS 402


>At1g73990.1 68414.m08569 peptidase U7 family protein similar to
           protease IV GB:AAA57008 from [Escherichia coli];
           contains Pfam profile PF01343: Peptidase family U7
          Length = 677

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 303 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVG 455
           +I   +DVA  G +Y+    N I+AE      ++G       +   YE +G
Sbjct: 450 VIASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIG 500


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 357  TENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 482
            TE ++L E+  K+E +  E EG+K     E    D  T + D
Sbjct: 966  TETQVLVEDTQKIEALTEEVEGLKANLEQEKQRADDATRKFD 1007


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -2

Query: 263 HLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 117
           H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At5g51850.1 68418.m06428 expressed protein similar to unknown
           protein (emb|CAB81354.1)
          Length = 590

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 328 LPKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSP 471
           L + TT    PRTRFS K+  +S +  P + +S SR       P  +P
Sbjct: 250 LRRDTTVSCSPRTRFSEKENKQSTSHKPNSSSS-SRPEPIIQKPKPTP 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.124    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,237,804
Number of Sequences: 28952
Number of extensions: 146893
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)