Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32134
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   189   2e-49
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   188   3e-49
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   0.95 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   6.7  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   6.7  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   8.9  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    25   8.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  189 bits (460), Expect = 2e-49
 Identities = 90/172 (52%), Positives = 122/172 (70%), Gaps = 2/172 (1%)
 Frame = +1

Query: 1   AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPG 180
           AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPG
Sbjct: 167 AVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPG 226

Query: 181 VEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMAN 360
           VE            APGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N
Sbjct: 227 VEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISN 286

Query: 361 TDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLK 510
            D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA   K
Sbjct: 287 ADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYK 338


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  188 bits (459), Expect = 3e-49
 Identities = 90/172 (52%), Positives = 122/172 (70%), Gaps = 2/172 (1%)
 Frame = +1

Query: 1   AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPG 180
           AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPG
Sbjct: 167 AVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPG 226

Query: 181 VEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMAN 360
           VE            APGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N
Sbjct: 227 VEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISN 286

Query: 361 TDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLK 510
            D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA   K
Sbjct: 287 ADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYK 338


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 316 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 492
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = -1

Query: 498 RVRIEFQHGLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLRLGQ 337
           +V +EF+  L IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 VSSSGLSPHSAGLTPYSGHGRHHQNK 322
           VS S    HS    P+S  GRH++ K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 299 HGRHHQNKRRTSTCPNRRW 355
           HG H       S CPN RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 277 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 453
           RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + +LN
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELN 317


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 298 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPL 459
           S+++  KQKK  +  + + +  ++ RL +  E+R  +   NK+ +    KL  L
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLREL 220


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 230 EVILDVSSSGLSPHSAGLTPYSGHG 304
           E IL  S  G+SP   G+T    HG
Sbjct: 35  EQILKFSKKGMSPSQIGVTLRDSHG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,238
Number of Sequences: 5004
Number of extensions: 37890
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)