Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32134
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                98   4e-21
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 45/82 (54%), Positives = 56/82 (68%)
 Frame = +1

Query: 1   AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPG 180
           AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PG
Sbjct: 164 AVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPG 223

Query: 181 VEXXXXXXXXXXXXAPGGHLGR 246
           VE             PGGHLGR
Sbjct: 224 VELQHVDRLNLLKLCPGGHLGR 245



 Score = 36.7 bits (81), Expect = 0.011
 Identities = 26/60 (43%), Positives = 31/60 (51%)
 Frame = +1

Query: 334 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 513
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 307 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 453
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 382 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 486
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 153 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 61
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 252 DETSKMTSRSQLQEVQLVNIQE-LHTGDVA 166
           DETS  +SRS++Q   LV   E LH  D++
Sbjct: 39  DETSSPSSRSRIQASSLVKTNEFLHARDIS 68


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 352 MANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 465
           +AN D +  +K+    K + AP KR++R T   N + +
Sbjct: 747 LANEDKSLNVKATRRSKPIAAPRKRILRKTSSRNKIVH 784


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,903
Number of Sequences: 59808
Number of extensions: 318190
Number of successful extensions: 1185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)