Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32134
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   172   1e-43
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   168   2e-42
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   1.9  
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   4.3  
At4g19515.1 68417.m02871 disease resistance family protein simil...    27   5.7  
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    27   5.7  
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    27   5.7  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   7.5  
At3g27150.1 68416.m03396 kelch repeat-containing F-box family pr...    27   7.5  
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    27   7.5  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  172 bits (418), Expect = 1e-43
 Identities = 84/172 (48%), Positives = 112/172 (65%), Gaps = 1/172 (0%)
 Frame = +1

Query: 1   AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIP 177
           A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+P
Sbjct: 172 AIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLP 231

Query: 178 GVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMA 357
           GVE            APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+ KM 
Sbjct: 232 GVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMV 291

Query: 358 NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 513
           N DL R++ SDEI+ V+    K   RA  K NPL N   MLKLNPYA   KR
Sbjct: 292 NADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKR 343


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  168 bits (408), Expect = 2e-42
 Identities = 82/172 (47%), Positives = 110/172 (63%), Gaps = 1/172 (0%)
 Frame = +1

Query: 1   AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIP 177
           A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+P
Sbjct: 173 AIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLP 232

Query: 178 GVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMA 357
           GVE            APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+ KM 
Sbjct: 233 GVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMV 292

Query: 358 NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 513
           N DL R++ SDE++ V+        RA  K NPL N   M KLNPYA   KR
Sbjct: 293 NADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKR 344


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 252 DETSKMTSRSQLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTS 73
           DETS  TS S ++  Q V       G   + +SQT ++  D E  L LDT   A   +  
Sbjct: 421 DETS--TSESDVENQQTVQAFTRTDGGQLKQSSQTQLVTVDGETRLDLDTLLKASAYILG 478

Query: 72  TKTLRLVH 49
           T    +V+
Sbjct: 479 TTGTGIVY 486


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 210 VQLVNIQELHTGDVAESASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 37
           + +++ +    G VA  A  T+  +ED  +  SLT+D    +  T  STKTL L   +D+
Sbjct: 78  ISMIDAELDRKGKVA--AKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDV 135

Query: 36  RPCLEA 19
              L A
Sbjct: 136 HTFLSA 141


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 213 EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 61
           E+  VN QE+H GD        + ++ D  GS + +T T    ++ S K L
Sbjct: 101 EIFPVNKQEMHVGDSCTITKCGVYVINDAAGSSSGNTMTPQCSSMDSLKLL 151


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -1

Query: 258 PDDETSKMTSRSQLQ-EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHF- 85
           P+DET  ++ +SQL+ ++ ++  Q+ +   + E  S+  ++ +D E     DT  ++++ 
Sbjct: 337 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNYI 395

Query: 84  --TLTSTKTLRLVHLKD 40
              + S  +  L++ KD
Sbjct: 396 EEIVVSALSYHLMNNKD 412


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -1

Query: 258 PDDETSKMTSRSQLQ-EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHF- 85
           P+DET  ++ +SQL+ ++ ++  Q+ +   + E  S+  ++ +D E     DT  ++++ 
Sbjct: 332 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNYI 390

Query: 84  --TLTSTKTLRLVHLKD 40
              + S  +  L++ KD
Sbjct: 391 EEIVVSALSYHLMNNKD 407


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 266 PHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGRSSVLP 418
           P S    P S H +HHQ +++ +  P      L  H+ S    + + S+ P
Sbjct: 335 PSSPSPPPLSSHHQHHQERKKIADSPAP--SPLPPHLISPKKSNRKGSMTP 383


>At3g27150.1 68416.m03396 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 422

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 349 KMANTDLTRLLKSDEIRKVLR 411
           K+ N   +RLLKSDEI KV R
Sbjct: 95  KLLNKGFSRLLKSDEIFKVRR 115


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 361 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 516
           TDL    KS+ I  V     ++ +   RK NP+T ++   K +P A  L ++
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQR 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,961,680
Number of Sequences: 28952
Number of extensions: 220480
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)