Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32132
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-lik...    38   0.006
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    35   0.030
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    35   0.030
AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical ...    35   0.040
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    34   0.069
Z48045-3|CAA88104.1|  342|Caenorhabditis elegans Hypothetical pr...    31   0.49 
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    31   0.65 
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    31   0.65 
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    28   4.6  
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    27   8.0  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      27   8.0  

>AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-like
           protease protein 5 protein.
          Length = 311

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 236 CLKIPQQNNFTDCGLYLLQYVEQFFKDPITDYTLPIKQLTN 358
           C K+PQQ N  DCG++++ + E F K      +LP   L +
Sbjct: 242 CQKLPQQKNSVDCGIFMMAFAEYFTKYNTAWQSLPTDALAD 282


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 188 KVSPLKIFNKDNIKGSCLKIPQQNN-FTDCGLYLLQYVEQFFKDPITDYTLP 340
           K SPLK  N +   GSC+++  QN+ F+    Y +QY  Q   +  T+ T+P
Sbjct: 229 KPSPLKEVNINQNAGSCVEVSWQNDEFSGADFYTIQYSLQSTPNNSTNMTIP 280


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 188 KVSPLKIFNKDNIKGSCLKIPQQNN-FTDCGLYLLQYVEQFFKDPITDYTLP 340
           K SPLK  N +   GSC+++  QN+ F+    Y +QY  Q   +  T+ T+P
Sbjct: 229 KPSPLKEVNINQNAGSCVEVSWQNDEFSGADFYTIQYSLQSTPNNSTNMTIP 280


>AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical
           protein B0348.5 protein.
          Length = 254

 Score = 34.7 bits (76), Expect = 0.040
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -1

Query: 369 SSNQLVNCFIGSV*SVIGSLKNCSTYCSRYRP 274
           +SN L+N F G+  S I SL+  +TY SRY P
Sbjct: 96  ASNDLMNSFNGATNSAIPSLRELATYASRYGP 127


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +2

Query: 248 PQQNNFTDCGLYLLQYVEQFF---KDPITDYTLPIKQLTNWFDEI--VVTRKREEISNLL 412
           P Q+NF DCGLY+L ++E  F     P+     P    + +F E   +    R+++ NL+
Sbjct: 735 PIQDNFYDCGLYVLHFIEGLFCYPNRPVNVNDFPNFDWSKFFPEANKMCDLMRDKVYNLI 794

Query: 413 KSLMNK 430
               +K
Sbjct: 795 LQQADK 800


>Z48045-3|CAA88104.1|  342|Caenorhabditis elegans Hypothetical
           protein C41C4.6 protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 242 KIPQQNNFTDCGLYLLQYVEQFFKDPITD 328
           ++PQQ N  DCG+++ ++  +F   P  D
Sbjct: 299 RMPQQTNNFDCGIFIAEFARRFLLSPPKD 327


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +2

Query: 101 ILIFDSLAGASRSRVVATLRDYLTCEYHVKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGL 280
           I  +DSL   + + V+  LR YL  E   K      F+   I+     IP+Q N +DCG+
Sbjct: 598 IEFYDSLYDGNTA-VLPALRGYLEAESLDKKKTAMNFSGWTIQ-QMTDIPRQQNGSDCGV 655

Query: 281 YLLQYVE 301
           +  Q+ E
Sbjct: 656 FSCQFGE 662


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +2

Query: 101 ILIFDSLAGASRSRVVATLRDYLTCEYHVKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGL 280
           I  +DSL   + + V+  LR YL  E   K      F+   I+     IP+Q N +DCG+
Sbjct: 598 IEFYDSLYDGNTA-VLPALRGYLEAESLDKKKTAMNFSGWTIQ-QMTDIPRQQNGSDCGV 655

Query: 281 YLLQYVE 301
           +  Q+ E
Sbjct: 656 FSCQFGE 662


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  DDDEHDKSPLENKMEPQQCCSKNE 82
           DD+E D   L +  E Q+CCSK +
Sbjct: 230 DDEEEDCKQLLSDEESQECCSKEK 253


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
            protein Y75B8A.22 protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 326  DYTLPIKQLTNWFDEIVVTRKREEISNLLKSLMNK 430
            D  LPI  +  W+DE      R ++ N+L+  +N+
Sbjct: 1041 DSVLPIGDIQKWYDEWKEAGARGDLVNVLQEKLNE 1075


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 326  DYTLPIKQLTNWFDEIVVTRKREEISNLLKSLMNK 430
            D  LPI  +  W+DE      R ++ N+L+  +N+
Sbjct: 1041 DSVLPIGDIQKWYDEWKEAGARGDLVNVLQEKLNE 1075


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,742
Number of Sequences: 27780
Number of extensions: 209162
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)