Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32129
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    29   0.41 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   2.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   3.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   5.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   5.1  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    25   5.1  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   6.7  

>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 311 LQYKNPQRPVEDHPRMLLHHIDRLQEHLAQNQAHLQ-KVLARRLSIQETREPHRLQ 475
           L YKN      D   M  +HI + +E+   N    + + LA RLS+ +  +P RLQ
Sbjct: 18  LNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQ 73


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 124 LKRQNKGAASSQEPDRPAPRPVEEERTSIAR 216
           L  Q    A  +EPD PA  P EEE+  + +
Sbjct: 583 LDDQQTTEAPFEEPDEPAHEPTEEEQEEMRK 613


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 121 RLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPTPA 234
           +L+   K +AS+  P  PAP   + E       PP P+
Sbjct: 111 KLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPS 148


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 133 QNKGAASSQEPDRPAPRPVEEERTSIAR 216
           Q   A   Q+P  P  +P+E++R +I R
Sbjct: 40  QGSFAPGQQQPLNPLAKPIEQDRDAIIR 67


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 184 PVEEERTSIARKPPT 228
           PV   RTSIAR+PP+
Sbjct: 41  PVSTARTSIARRPPS 55


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 97  QSEDDEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPT 228
           + ++ E  + +   K   + +E + P P+P   E T  A  PP+
Sbjct: 734 REKEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRPALAPPS 777


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 DEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKP-PTPAR 237
           +E +R   +  GA   +EP R    P   E   +++KP P P R
Sbjct: 12  NESSRAYEEIFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTR 55


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 287 VLNNVKLHLQYKNPQRPVEDHPRMLLHHIDRLQEHL 394
           + +N++LH  Y N +  V     ML  H+ R Q H+
Sbjct: 94  ISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHI 129


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/77 (20%), Positives = 33/77 (42%)
 Frame = +2

Query: 239 RRQAMVNLMNQSDLYNVLNNVKLHLQYKNPQRPVEDHPRMLLHHIDRLQEHLAQNQAHLQ 418
           R   ++  ++   L  + N+    +  K+P    +   R +LH      E +A  Q  LQ
Sbjct: 727 RNDKLIKSIHPGSLSGISNSF---VNSKHPIEQWQSRLRKILHLFSGRNEDIASLQCVLQ 783

Query: 419 KVLARRLSIQETREPHR 469
              + R+ +++ +  HR
Sbjct: 784 FGSSERIHLEDIQNSHR 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.305    0.121    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,888
Number of Sequences: 5004
Number of extensions: 26491
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)