Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32129
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 33 0.14
SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 30 1.3
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 30 1.3
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24) 29 2.3
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 29 3.0
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23) 28 5.3
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9) 28 5.3
SB_14260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 109 DEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPTPAREA 243
D T L R N S +PD P+ P E E+T I ++ +P E+
Sbjct: 392 DVYTALHRVNDDDPQSPQPDSPSAVPEEPEKTEIKKEAESPVDES 436
>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 QSEDDEITRLKRQN-KGAASSQEPDRPAPRPVEEERTSIARKPP 225
Q EDD TR QN + S + + +P+E ER I R PP
Sbjct: 34 QQEDDTRTRQSAQNLQSEGGSGQSLLISSKPIEPERAGIERHPP 77
>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1101
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 94 QQSEDDEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPP 225
Q SE+D+ + + + S+EP +P+P P T PP
Sbjct: 880 QPSEEDKQPDTRSEGGHVSKSEEPQQPSPSPEPAAPTETPESPP 923
>SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Frame = +2
Query: 152 HHKNQIVQPQDLLKKKELR*HANHL--HQLGRRQAMVNLMNQSDLYNVLNNVKLHLQYKN 325
HH+ I+ Q + + E R L Q L+++ D + V LH Q N
Sbjct: 202 HHQGDILNYQIMFHQGESRKRQTVLLHRQDNNHDHQTVLLHRQDNNHDHQTVLLHRQDDN 261
Query: 326 PQRPVEDHPRMLLHHIDRLQEHLAQNQAHLQKVLARRLSIQETREP 463
DH +LLH D Q H Q H L+ L ++ R+P
Sbjct: 262 -----HDHQTVLLHRQDDSQNHQIVTQCH---QLSLSLHARQRRDP 299
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 157 QEPDRPAPRPVEEERTSIARKP 222
+E +RP PRP + + T+I RKP
Sbjct: 320 EEEERPTPRPTKAKPTAIIRKP 341
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 157 QEPDRPAPRPVEEERTSIARKP 222
+E +RP P+P + + T+I R+P
Sbjct: 442 EEEERPTPKPTKAKPTTIKRRP 463
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +2
Query: 272 SDLYNVLNNVKLHLQYKNPQRPVEDHPRMLLHHIDRLQEHLAQNQAHLQKVLARRLSIQE 451
+++ N LN +K LQ V+D M L D L L + AHL++ AR
Sbjct: 211 TEMENELNELKHKLQQ------VQDERDMALVQRDHLAT-LGKETAHLRQPAARPEDTLA 263
Query: 452 TREPHRLQPTVQLEVRNG 505
++ R QP + EVR G
Sbjct: 264 NQDRPRTQPLTRPEVREG 281
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 308 HLQYKNPQR----PVEDHPRMLLHHIDRLQEHLAQNQAHLQKVLARRLSIQETREPHRLQ 475
+LQ+K P R P+ H L H LQ+H Q H ++ + +++ + P R
Sbjct: 74 YLQHKTPLRQHKTPLRHHKTPLRQHKTSLQQHKISLQQHKTRLRQHKTPLRQHKTPLRQH 133
Query: 476 PT 481
T
Sbjct: 134 KT 135
>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
Length = 347
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 302 KLHLQYKNPQRPVEDHPRMLLHHIDRLQEHLAQNQAHLQKVLARRL-SIQETREPHRLQP 478
K + + + + +E+H L + ++H+A Q + K+L +R+ + + + P + +
Sbjct: 16 KANARLEEEKTSIEEHAHYLQQLLQEKEDHIAHAQ-EMNKILKQRVEKLAQKQNPKKNKD 74
Query: 479 TVQLEVR 499
T +LE R
Sbjct: 75 TKELEKR 81
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 109 DEITRLKRQNKGAASSQEPDRPAPRPVEE-ERTSIARKPP 225
DEI RLK +NKG + P P P ++ SI+ P
Sbjct: 814 DEIERLKEENKGQNQGLQASIPEPLPYKQVNALSISETAP 853
>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
Length = 684
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 80 HPLKGNKVRMMK*HALKDKTKAQLHHKNQIVQPQDLLKKKELR 208
+PL G++V K KDK K + HK + V+ QD K+K+++
Sbjct: 463 NPL-GDEVIKKKKKKHKDKDKTKDKHKTKKVETQDKHKRKKIK 504
>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
Length = 857
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 344 DHPRMLLHHIDRLQEHLAQNQAHLQKVLARRLSI 445
D+ R L H++D L HL Q H + RR +I
Sbjct: 823 DYIRSLTHYVDTLATHLLHWQTHPSGMKIRRCTI 856
>SB_14260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 6.9
Identities = 25/96 (26%), Positives = 45/96 (46%)
Frame = +2
Query: 143 AQLHHKNQIVQPQDLLKKKELR*HANHLHQLGRRQAMVNLMNQSDLYNVLNNVKLHLQYK 322
A+L + Q + K EL + + ++L R++A ++++ S+ V+ K
Sbjct: 14 AELQRREQELCRMLTKKDAELADYKDSGYKLSRKEASTHVLDGSEDLGPGAGVQRKSPVK 73
Query: 323 NPQRPVEDHPRMLLHHIDRLQEHLAQNQAHLQKVLA 430
+P+RP+ P L H L+ Q Q L+K LA
Sbjct: 74 SPKRPLPPSPDTL--HSKELE---LQRQEELKKRLA 104
>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/78 (20%), Positives = 35/78 (44%)
Frame = +2
Query: 227 HQLGRRQAMVNLMNQSDLYNVLNNVKLHLQYKNPQRPVEDHPRMLLHHIDRLQEHLAQNQ 406
H++ R + + M ++L Q K +ED L I Q+H+ +++
Sbjct: 206 HEISRAKETIVCMKAERKKLKSEKMELLSQMKQVYAILEDKESELGEFIKNYQQHMRESE 265
Query: 407 AHLQKVLARRLSIQETRE 460
+Q++L+ + S + R+
Sbjct: 266 IKIQRLLSEKESWERERK 283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.305 0.121 0.332
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,173
Number of Sequences: 59808
Number of extensions: 209585
Number of successful extensions: 593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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