Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32129
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.15 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 10/49 (20%), Positives = 26/49 (53%)
 Frame = +1

Query: 94   QQSEDDEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPTPARE 240
            QQ +  +  + ++Q +    SQ+P +  P+P ++++    ++P    +E
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKE 1549


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 119 HALKDKTKAQLHHKNQIVQPQDLLKKKE---LR*HANHLH 229
           H L D++ AQ   + Q+V   ++  +KE   L    +HLH
Sbjct: 306 HTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHLH 345


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 148 ASSQEPDRPAPRPVEEERTSIARKPPTPARE 240
           + +++PD+PA        TS+   P +  +E
Sbjct: 584 SGTEKPDKPASSSASSAPTSVCSSPRSEDKE 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.305    0.121    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,911
Number of Sequences: 438
Number of extensions: 1955
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.1 bits)