Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32129
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    28   4.3  
At4g01810.1 68417.m00238 protein transport protein-related relat...    27   5.7  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    27   7.5  
At3g09000.1 68416.m01053 proline-rich family protein                   27   7.5  
At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family ...    27   7.5  
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /...    27   7.5  
At1g69280.1 68414.m07943 expressed protein                             27   7.5  
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ...    27   9.9  
At3g54490.1 68416.m06029 eukaryotic rpb5 RNA polymerase subunit ...    27   9.9  
At2g13550.1 68415.m01494 expressed protein                             27   9.9  
At1g54060.1 68414.m06160 expressed protein similar to 6b-interac...    27   9.9  
At1g51090.1 68414.m05744 heavy-metal-associated domain-containin...    27   9.9  

>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 145 AASSQEPDRPAPRPVEEERTSIARKPPTPAREA 243
           A   Q P  P P+P       IAR PP P + A
Sbjct: 272 APPPQPPPPPPPKPQPPPPPKIARPPPAPPKGA 304


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 142 GAASSQEPDRPAPRPVEEERTSIARKPPTPA 234
           G  +  EP+RP+P+P   +RT +   PP  A
Sbjct: 13  GTLTPLEPNRPSPQP---DRTPVPHSPPVVA 40


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 130 RQNKGAASSQEPDRPAPRPVEEERTSIARKPPTP 231
           +Q      + +P++P P+P   ++ S  ++PP P
Sbjct: 486 KQESPKQEAPKPEQPKPKPESPKQESSKQEPPKP 519


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 121 RLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPTPAR 237
           R    + G+A S  P R  PRP          +P TP R
Sbjct: 208 RTTTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTR 246


>At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family
           protein similar to Sin3 associated polypeptide p18
           (2HOR0202) (Swiss-Prot:O00422) [Homo sapiens]
          Length = 152

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 154 SQEPDRPAPRPVEEERT 204
           +Q+P RP P PV+ E+T
Sbjct: 22  NQQPPRPKPEPVDREKT 38


>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           SEC14-like protein 2 (Alpha-tocopherol associated
           protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
           taurus}; similar to GI:807956 from [Saccharomyces
           cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 573

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 94  QQSEDDEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPTPARE 240
           ++++++E T  K++        E ++PA    EEE++S A    T + E
Sbjct: 132 EETKEEEKTEEKKEETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEE 180


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 234 SWCRWFAC-YRSSFFFNRSWGWTIW 163
           SWCRW +C Y SS  +     W+ W
Sbjct: 337 SWCRWPSCDYNSSCGWLFCCHWSCW 361


>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
           similar to SP|Q01205 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +1

Query: 145 AASSQEPDRPAPRP------VEEERTSIARKPPTPA 234
           A S + P++PAP+P       + E T +A KP  P+
Sbjct: 178 APSEKAPEKPAPKPSPPAEKPKVESTKVAEKPKAPS 213


>At3g54490.1 68416.m06029 eukaryotic rpb5 RNA polymerase subunit
           family protein similar to SP|P19388 DNA-directed RNA
           polymerase II 23 kDa polypeptide (EC 2.7.7.6) {Homo
           sapiens}; contains Pfam profiles PF03871: RNA polymerase
           Rpb5 N-terminal domain, PF01191: RNA polymerase Rpb5
           C-terminal domain
          Length = 233

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 89  KGNKVRMMK*HALKDKTKAQLHHKNQIVQPQDLLKKKELR 208
           K  K ++++ HAL+DK    L  K+  V+   L KK+ ++
Sbjct: 176 KEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVK 215


>At2g13550.1 68415.m01494 expressed protein 
          Length = 181

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 118 TRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPP 225
           TR  RQ K   +S  PD  +P P +E    I R  P
Sbjct: 23  TRTGRQPKSPPNSHHPDESSPSPQQERH--ITRSEP 56


>At1g54060.1 68414.m06160 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 383

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 103 EDDEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKP 222
           +DDEI  +      + S Q P  P   P  +   ++ +KP
Sbjct: 3   DDDEIQSIPSPGDSSLSPQAPPSPPILPTNDVTVAVVKKP 42


>At1g51090.1 68414.m05744 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 171

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 157 QEPDRPAPRPVEEERTSIARKPPTP 231
           Q+P  PAP P + +  ++ R  P P
Sbjct: 89  QKPTAPAPAPAQAQAPALVRPAPVP 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.305    0.121    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,659,631
Number of Sequences: 28952
Number of extensions: 146366
Number of successful extensions: 289
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)