Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32128
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   0.72 
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   2.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.2  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.7  

>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 419 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 279
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -2

Query: 368 LVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMYI*KPEARSESGPRPV*QSVGTIRGRA 189
           LVF S    IQ   K  SE+ T  ++LS ++L  +  PE   ++GP  + Q     R   
Sbjct: 126 LVFMSSSSLIQSQQKI-SENVTPALILSGIMLGGVCVPELLKKAGPIAIAQGRKAPRQDP 184

Query: 188 DEA 180
           DE+
Sbjct: 185 DES 187


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 126 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 13
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 374 KTLVFYSHYMNIQKLPKTESEHPTFH 297
           K++VF + Y +I K PK   E   FH
Sbjct: 26  KSIVFRTQYESIFKNPKHHGEKKPFH 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,312
Number of Sequences: 5004
Number of extensions: 50668
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)