Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32128
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587... 30 0.96
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588... 29 2.9
02_05_0977 - 33239887-33240566,33241010-33241985 28 5.1
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 28 5.1
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 6.8
03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336... 27 6.8
02_05_0346 - 28152617-28152758,28152835-28153001 27 6.8
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 27 8.9
>06_01_0785 -
5873244-5873357,5873458-5873562,5874333-5874424,
5874525-5874594,5875080-5875202,5875287-5875372,
5875547-5875648,5875874-5876096,5876217-5876282,
5876407-5876497,5876574-5876701,5877734-5877749,
5878171-5878318,5878440-5878511,5878586-5878690,
5879122-5879291,5880093-5880424
Length = 680
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 194 YLVWYPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 346
Y +YP S +G PP+ + T G G LD +Q+W G++
Sbjct: 424 YAYFYPPSNPNFQGLPDEKPPLLVKTHGGPTAETRGILDLSVQYWTSRGWA 474
>06_01_0786 -
5881178-5881303,5881523-5881627,5882078-5882169,
5882267-5882336,5882639-5882724,5882916-5883017,
5883375-5883597,5883693-5883758,5883896-5883986,
5884019-5884057,5885401-5885548,5885623-5885715,
5885782-5885886,5886645-5886826,5886912-5887084
Length = 566
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 194 YLVWY-PHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 346
Y +Y PH+ + +G S PP+ + T G G LD +Q+W G++
Sbjct: 347 YAYFYAPHN-HIFQGSSDEKPPLLVRTHGGPTDEARGVLDLGVQYWTSRGWA 397
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 75 SPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALT 245
SPA F WV KH + + SS S + + +++ GTHT A AA+T
Sbjct: 198 SPAPPSRAAFPSWVTKHDRHLLSSPAS---TIAPDAVVALDGSGTHTSISDAIAAVT 251
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 VW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFG 340
+W YP V + E H++ +F+ G T D ++FW +FG
Sbjct: 398 LWKYPSMVKMAELTGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 445
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 VW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFG 340
+W YP V + E H++ +F G T D ++FW +FG
Sbjct: 3303 LWKYPSMVKMAELTGHTSRVLFTAQSPDGLTVASAAADETLRFWNVFG 3350
>03_03_0134 +
14732622-14732830,14733202-14733316,14733429-14733632,
14733862-14733990,14734077-14734244,14734920-14735177,
14736051-14736096,14736574-14736601,14737206-14737295,
14738132-14738204,14738291-14738319,14738425-14738548,
14738741-14738851,14739082-14739182,14739263-14739365
Length = 595
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 108 LWVLKHGQLMTSSEVSAGWSHSASSLI 188
LW+L+H LM SS++ W SA I
Sbjct: 304 LWLLRHSSLMGSSDID-NWVQSAKESI 329
>02_05_0346 - 28152617-28152758,28152835-28153001
Length = 102
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 123 HGQLMTSSEVSAGWSHSAS--SLICSTSYGTHTLSHWARAALTP 248
+G SS VS W A+ +L CS S HW+ A L P
Sbjct: 27 YGTRRLSSSVSISWRIQATRQALQCSRSLMLKLADHWSPAKLQP 70
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -3
Query: 325 KLNQSIQLSTWSCLPYS*CIYKNRRRGVRAA--LAQCDRVWVPYEVEQMRLDAECDQPAE 152
K+ + ++W+ L + IY+N+ G RAA L + D+ V + A C + +
Sbjct: 671 KIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKD 730
Query: 151 TSELVMS*PCFSTQRRKGCS 92
+E+ + + ++ GCS
Sbjct: 731 AAEMRILMKGINLKKDGGCS 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,616
Number of Sequences: 37544
Number of extensions: 335887
Number of successful extensions: 933
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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