Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32128
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)               27   6.9  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                27   9.2  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                27   9.2  

>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 78  PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 224
           PA+  +QP+          +  S+ +  W+ S ++ IC+  YG H + H
Sbjct: 48  PAVYSQQPYYGPPTTQQTFVQVSKAAILWTTSNTTNICTGQYGNHNMDH 96


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 339 PKITQN*IRASNFPHGLVCPTPNVYIKTGGAE 244
           PK T+  +RA   PH  V   P V   TGG E
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGGE 289


>SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 362 FYSHYMNIQKLPKTESEHPTFHMVLSALLLMYI*KPEARSESGPRPV*QSVG 207
           +YS Y  ++K+PK +S   T   ++  +   +      RS++GP+ + +  G
Sbjct: 384 YYSKYPFVRKIPKGQSNSNTIIQMMKQIFSEHGVPTIVRSDNGPQYISKDTG 435


>SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)
          Length = 422

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 405 FINWIKYNNTKNSRVLFSLHE 343
           F+N +K+N  KN RVL   H+
Sbjct: 385 FVNGLKFNGWKNERVLQEFHD 405


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 178  PASSALPRMVPTLCHTGRGPLSL 246
            PASSA P   P++ H G  P+ L
Sbjct: 1712 PASSATPESAPSVYHAGADPVIL 1734


>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 185 EAGC*MRPTSRNFRAGHELTVLQHPK 108
           E GC + P  R  R G  LT+ Q+ K
Sbjct: 206 ELGCHLAPVGRGKRTGKTLTIFQYKK 231


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/94 (23%), Positives = 36/94 (38%)
 Frame = +1

Query: 40  PSFSPSCLVLNYLRRCGKSSPSAFGC*STVNS*PALKFRLVGRIQHPASSALPRMVPTLC 219
           P   P C  + +LR     SP   GC + V         ++ + Q      + R+V T  
Sbjct: 615 PPAPPPCWEVAFLRDASTLSPCKSGCGTMVT---ICNMNMIKKSQLQHFPQVKRLVDTFN 671

Query: 220 HTGRGPLSLRASGFYIYIRSRADKTMWKVGCSDS 321
           +      SL +S F    R +A+K    +   +S
Sbjct: 672 NMTSSNSSLNSSAFMDTNREKAEKDRLSLNTKNS 705


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,499,599
Number of Sequences: 59808
Number of extensions: 365619
Number of successful extensions: 1071
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)