Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32128
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    30   0.85 
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    28   4.6  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    28   4.6  
Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    27   6.0  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical protein
            T05A12.4b protein.
          Length = 975

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 262  KNRRRGVRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 110
            K+ R G R    + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNG-RVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 262  KNRRRGVRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 110
            K+ R G R    + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNG-RVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 108 LWVLKHGQLMTSSEVSAGWSHSASSLICSTSYG 206
           LWV   G L+TS+    GWS   S +I +  YG
Sbjct: 551 LWVFTKG-LLTSNFSKVGWSFFVSWVIIANHYG 582


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 248 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 337
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 248 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 337
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical
           protein Y57G11C.23 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 72  LSPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAAL 242
           LS AL +   F ++    G  +  + ++ GW++++  +I S  +   T  +WA A +
Sbjct: 150 LSAALNDVMSFYIFRFLVGFAIAGT-LTVGWTYASEMVIPSRRFRLRTFPNWANARM 205


>Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical
           protein C07E3.9 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 298 TWSCLPYS*CIYKNRRRGVRAALAQCDRVWV 206
           +WSC+  S  I  ++  G +AAL  CD++ V
Sbjct: 95  SWSCMN-STAICSDKNMGCKAALCDCDKIVV 124


>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 338 QKLPKTESEHPTFHMVLS 285
           QK+ KT   HP FH VL+
Sbjct: 21  QKIAKTREHHPNFHAVLA 38


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 289 CLPYS*CIYKNRRRGVRAALAQCDRVW 209
           C PY  C+   R+  V   LA+C++++
Sbjct: 24  CKPYEKCLKAARKEPVEKCLAKCEKIF 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,813
Number of Sequences: 27780
Number of extensions: 283817
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)