Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32125
         (366 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.42 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.42 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   6.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 293 PPSTPWAGSRPXRSSMRWSVRLL 361
           PP  P  GS   R+ + W V+ L
Sbjct: 38  PPREPTVGSEVKRTYIEWGVKFL 60


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 293 PPSTPWAGSRPXRSSMRWSVRLL 361
           PP  P  GS   R+ + W V+ L
Sbjct: 38  PPREPTVGSEVKRTYIEWGVKFL 60


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 361  QKPHRPSHRAPXRT 320
            QKP +PS+R P  T
Sbjct: 1167 QKPTKPSYRPPSTT 1180


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 218 TCFCEN 201
           TCFCEN
Sbjct: 695 TCFCEN 700


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.131    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,752
Number of Sequences: 336
Number of extensions: 650
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)