Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32125
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 262 PCXDPLAGMPPXTRRPASVRT 200
           P    ++GMPP    P S+ T
Sbjct: 421 PNMSNMSGMPPLPNMPGSMPT 441


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 190 VFSMFSQKQVAEFXEAFQLMDHXKD 264
           +FS++  + + E    F+L  H KD
Sbjct: 96  LFSLYYPQLLREMSALFKLFYHAKD 120


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 190 VFSMFSQKQVAEFXEAFQLMDHXKD 264
           +FS++  + + E    F+L  H KD
Sbjct: 96  LFSLYYPQLLREMSALFKLFYHAKD 120


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 45  AVCWTIDEE 19
           A+CWT DE+
Sbjct: 157 ALCWTQDED 165


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 45  AVCWTIDEE 19
           A+CWT DE+
Sbjct: 210 ALCWTQDED 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,732
Number of Sequences: 438
Number of extensions: 824
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)