Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32120
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    28   0.72 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.2  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    26   3.8  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   8.9  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 417 KLANIYVENSYQNHCW 464
           KL + Y ENS  NHCW
Sbjct: 135 KLFDTYEENSIMNHCW 150


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 326  CTCIGIWFLSYLPN*SRHLLNVIMTI 403
            C+C G W L   P   R +LNV  ++
Sbjct: 2153 CSCSGEWVLQLSPTKFREMLNVYQSV 2178


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 1   LNQFTCHSIHLIIICGYKSFVQSLIKYPS 87
           +++FT  S+ + +IC Y+   Q +I  PS
Sbjct: 34  VDEFTPSSLQMALICAYQLAAQRVITNPS 62


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 380 LLNVIMTIQTSF*IS*YLC*KQLSKSLLAFNLIGRGIHICGKEGL 514
           LLN I T      +S     + ++K+LL     GR + +CG+EGL
Sbjct: 195 LLNPIPTYARIIGVSKLSLGEVVAKTLLKLGA-GRSLVVCGEEGL 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,357
Number of Sequences: 5004
Number of extensions: 29910
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)