Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32115
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   0.70 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   2.1  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    25   2.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   3.7  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   4.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   6.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   6.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      24   8.6  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 32   EEQEISYQRGGLESLRETNGDVRSRK 109
            EE+++   +G LESLRE N  V S K
Sbjct: 948  EEKDLLDTKGELESLRENNATVLSEK 973


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 84  LTEMCAPENDKPVSDSDKGCERAKLLLDCFVANK 185
           L EM +P  ++P S+  + CE   +LLD  + N+
Sbjct: 244 LVEMLSPLYERPNSNPFEVCELNAILLDAKIQNQ 277


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 97  ALQKMTNQ-SVTVTRAAKEQNFSSTVSLQTKE 189
           A+Q+ +N+ S+TV  A K ++FSS+V+ Q  E
Sbjct: 97  AVQQPSNELSITVPEAYKLEDFSSSVANQLLE 128


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 207 VRRPRNFLCLQRNSRGEVLLFRS 139
           VR+P +F+C   N RG  L + +
Sbjct: 354 VRKPSSFICTISNDRGSELTYNN 376


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 219 LFFKVRRPRNFLCLQRNSRGEVLLFRSPCH 130
           +F KVR PR  L ++     ++LL R+P H
Sbjct: 481 VFGKVRFPRGLLSVEARDLIKLLLNRNPKH 510


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 103 QKMTNQSVTVTRAAKEQNFSSTVSLQTKEVSRSSHFKEQS 222
           QK   +S++ +  ++  NF +T+S   +EV  S   KE S
Sbjct: 25  QKSQKKSISPSSGSELPNFKTTISQNNEEVKTS--LKEDS 62


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 255 RYYQVIIETSQALFFKVRRPRNFLCLQRNSR 163
           RYY  I +  +AL+  +    + L L+RNSR
Sbjct: 447 RYYSRIKDAMKALYEDLLYDEDALTLERNSR 477


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 18  AATIEKSKKYLTSEEDLKAFEKLTEMCAPENDKPVSDSD 134
           ++ I + KK L  EEDL   +  +E  +    KP  D D
Sbjct: 343 SSPIVRKKKVLRYEEDLDDMKLTSEGLSKSLSKPFPDID 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,689
Number of Sequences: 5004
Number of extensions: 17983
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)