Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32115
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    27   4.6  
04_04_0107 - 22826319-22826354,22826450-22826493,22826763-228268...    26   8.1  
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    26   8.1  

>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
            32520145-32520384,32521033-32521149,32521213-32521606,
            32521752-32521998,32522086-32522315,32522768-32522823,
            32522903-32523094,32523274-32523376,32523478-32523544,
            32524312-32525154,32525547-32525670,32525965-32526213,
            32526354-32526443,32526530-32526649,32526664-32526738,
            32527001-32527147,32527255-32527365,32527446-32527667,
            32527777-32527896,32527971-32528270,32528355-32528480,
            32529246-32529360,32529556-32530019,32530119-32530253,
            32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 133  TRAAKEQNFSSTVSLQTKEVSRSSHFK 213
            +R AKEQN  + V  +T+   R++H K
Sbjct: 1302 SRLAKEQNVEAHVKTRTRSSKRTAHMK 1328


>04_04_0107 -
           22826319-22826354,22826450-22826493,22826763-22826827,
           22828521-22828753
          Length = 125

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 137 GLRKSKTSPRLFRCKQRKFLGLLTLKNKA---CDVSI 238
           G  + KT+P + + ++R F GL+ +K K    C V+I
Sbjct: 47  GSSEKKTAPEVSKGERRGFSGLMMMKKKVHPKCQVTI 83


>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 3   GLFDVAATIEKSKKYLTSEEDL 68
           G+FD+ A +EK  K L S+E +
Sbjct: 314 GIFDIQALVEKLLKQLASQESI 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,245
Number of Sequences: 37544
Number of extensions: 111577
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)