Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32115
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_6694| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       26   8.3  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     26   8.3  

>SB_30940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 188 SFVCNETVEEKFCSFAALVTVTDWFVIFWSAHLR*FLEGFQVLL 57
           +F+  ETV      F  L   T+ + + WS H R  L  FQ L+
Sbjct: 159 TFLDTETVYFPIFIFLRLPYYTNMYFVLWSVHRRPRLMAFQGLI 202


>SB_6694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 VSLQTKEVSRSSHFKEQSL*CFNNYLIISKQS 264
           V L  KEV R   + +  L  F NY+  SK+S
Sbjct: 371 VDLDPKEVDRVEKYNKDMLNTFTNYIKYSKES 402


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 24  TIEKSKKYLTSEEDLKAFEKLTEMCAPEN-DKPVSDSDKGCERAKLLLD 167
           +I+   +Y    E+ + F K+ ++      D P+ DSD+   + KL +D
Sbjct: 423 SIQTGGEYSLPREEEEYFRKINDLSKTSILDDPLDDSDRSVRKRKLEID 471


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 12   DVAATIEKSKKYLTSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLDCFVANKG 188
            ++  ++EK+ +    E+ +   EK  E   P+ +KP     K  E   L+ +  VA+ G
Sbjct: 6242 ELTVSVEKAVEEKPLEKPIARKEKKVEKVKPKKEKPTEREAKPLEEKHLVEEKGVASIG 6300


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   LFDVAATIEKSKKYLTSEEDLKAFEKLTEMCAP 104
           LFD AA I KS K     E + +FE +T+   P
Sbjct: 166 LFDAAALIRKSIKKCKKWEFIGSFEDITDENVP 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,355
Number of Sequences: 59808
Number of extensions: 136461
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)