Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32115
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       30   0.45 
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    30   0.45 
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    30   0.45 
AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical ...    28   1.8  

>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 51   TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 167
            T E+++ A E+  E+   E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 51   TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 167
            T E+++ A E+  E+   E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 51   TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 167
            T E+++ A E+  E+   E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical
           protein K10G6.5 protein.
          Length = 124

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 134 VTVTDWFVIFWSAHLR*FLEGFQVLLAGKIFLALLNSSGYIE 9
           +  T W+ + W+  L  F+  FQ++ A + FLALL  SG I+
Sbjct: 55  IETTSWYPVVWTCWLHMFILYFQIMGACE-FLALL--SGLID 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,695,822
Number of Sequences: 27780
Number of extensions: 106718
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)