Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32115
         (368 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    27   2.9  
At2g04039.1 68415.m00383 expressed protein                             26   6.8  
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    26   9.0  

>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 54  SEEDLKAFEKLTEMCAPENDKPVSDSDKGCERA 152
           +E+ L+  +    +C P +D+P +   +GCE+A
Sbjct: 208 AEKVLRTVKTPATVCGPSSDRPYACPYEGCEKA 240


>At2g04039.1 68415.m00383 expressed protein
          Length = 199

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  CALQKMTNQSVTVTRAAKEQNFSSTVSLQTKE 189
           CALQ+ +  +V   +  KE+   STV++  K+
Sbjct: 46  CALQESSTSAVATEKKNKEEGEESTVAVPAKK 77


>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 145 KEQNFSSTVSLQTKEVSR 198
           KEQ  S+TV LQ KE++R
Sbjct: 101 KEQKSSTTVKLQLKEIAR 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,210,493
Number of Sequences: 28952
Number of extensions: 95505
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)