Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32114
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1) 31 0.74
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25) 29 3.0
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8) 28 4.0
SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 27 6.9
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 16 PNFFPNGYQDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 168
P+ P + P HP S+ PY T L G + REP P S+ H P
Sbjct: 483 PSGMPTHREPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 532
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 QDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 168
+ P HP S+ PY T L G + REP P S+ H P
Sbjct: 520 EPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 293 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 430
ST +S T RT+ + S ++ R+C++ T GR+ RGK +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201
>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
Length = 570
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 279 HLRCLFANHSLQHR-LCHLLFHKGITVVVVRRCPHC 175
H C + +LQ+R LCH L HK V ++ C HC
Sbjct: 329 HKLCYYV--ALQYRSLCHYLLHKLCYCVALQYCSHC 362
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +2
Query: 221 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS 400
N W S CS LA +N + ++ RNR +T +G+ +A L+
Sbjct: 229 NSPWYSEACSSTLASAFSSGSWNNRKIVTVDVRNRCTKTHTGT-----SASAPLAAGILA 283
Query: 401 RGKSFTRNATMQQSTHILI 457
RN T + HI++
Sbjct: 284 MALEVNRNLTWRDMQHIVV 302
>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 58 EEEVVSNWPYRTTPLVLPGAKVRRE---PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQK 228
++E++ + + P A E PG ++ R P P P N + +L +K
Sbjct: 290 KQEILESQEFAQAPATPRSATTNPEDSSPGNRKAANRETPPPGTSTPKNIEAASSLQHEK 349
Query: 229 VAESV-LQRVVGEEAPKVLHKQFNSPINL 312
V E++ ++R+ EE K K N L
Sbjct: 350 VVETLEIRRMAVEEKRKKRMKYENGETGL 378
>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
Length = 526
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 251 EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLSGSKLRL 361
EWL +H R C S Q+ T+NRT+ T S ++RL
Sbjct: 51 EWLVAKHERACHRASEFQAKTMTKNRTIWTPS-PRIRL 87
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 133 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 309
PG ++ R P P P N + +L +KV E++ ++R+ EE K K N
Sbjct: 176 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 235
Query: 310 L 312
L
Sbjct: 236 L 236
>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
Length = 201
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 133 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 309
PG ++ R P P P N + +L +KV E++ ++R+ EE K K N
Sbjct: 21 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 80
Query: 310 L 312
L
Sbjct: 81 L 81
>SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -1
Query: 345 PDRVCNVLFRV*IDWRVELLVQHLRCLFANHSLQHR-----LCHLLFHK 214
PD N + + + R + L+ H+R F N + R L HL+FHK
Sbjct: 71 PDTTANQITSMFVKIRKQELIIHIRLTFENEHRRIRLQPGLLIHLIFHK 119
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 27.5 bits (58), Expect = 6.9
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Frame = +1
Query: 94 TPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPN--HDYRDTLMKQKVAESVLQRVVGEE 267
TPL L R P P L H P P +A + H + L+ + S V
Sbjct: 420 TPLTLSTKPCFRTPHPLSQALLHIPRPFNQALLHVPHTFNQALLHSHPSPSQPSPVSHPP 479
Query: 268 APKVLHKQFNSPINLYSEQNIANSIRQQTSP 360
A +LH SP S + + T P
Sbjct: 480 AQALLHTSHPSPATHPSPKPCFTFLTLSTKP 510
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 PNGYQDPKH-PEEEVVSNWPYRTTPLVLPGAKVRREPGP 141
P+ + P+H P+ E + Y++TP+ P K R P P
Sbjct: 432 PDSHALPQHTPQGEDLGQAAYQSTPISKPSVKSRLGPRP 470
>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 278 CCTSNSTLQSIYTRNRTLQTLS 343
CC + +TL+ I T R LQT+S
Sbjct: 390 CCGNRATLEKILTFGRYLQTMS 411
>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 138 PHRELPASSPQPSNEGTS 191
PH+ P PQP NEG S
Sbjct: 268 PHQPAPGIPPQPMNEGNS 285
>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 441 DCC--IVAFLVKDLPLDNVRPSVMAVSWQRRSLLPDRV 334
+CC + F + DLP+D+ S+ WQ+ DR+
Sbjct: 251 ECCWTLFCFCMDDLPVDDGSGSIDCCQWQKDDPDEDRI 288
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,187
Number of Sequences: 59808
Number of extensions: 388711
Number of successful extensions: 1296
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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