Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32111
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 281 2e-76
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 276 5e-75
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 273 4e-74
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 273 4e-74
SB_56| Best HMM Match : Actin (HMM E-Value=0) 272 1e-73
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 9e-48
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_54| Best HMM Match : Actin (HMM E-Value=0) 65 2e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 56 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 1e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 5e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 5e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 50 8e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 2e-06
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 0.72
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 0.95
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 1.3
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 2.9
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 3.8
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 3.8
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 3.8
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 5.0
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 6.7
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 27 6.7
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 27 8.8
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 27 8.8
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 27 8.8
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27) 27 8.8
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 281 bits (688), Expect = 2e-76
Identities = 127/129 (98%), Positives = 128/129 (99%)
Frame = +2
Query: 47 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 226
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 406
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 407 TQIMFETXN 433
TQIMFET N
Sbjct: 121 TQIMFETFN 129
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 276 bits (677), Expect = 5e-75
Identities = 124/129 (96%), Positives = 127/129 (98%)
Frame = +2
Query: 47 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 226
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 406
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 407 TQIMFETXN 433
TQIMFET N
Sbjct: 121 TQIMFETFN 129
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 273 bits (670), Expect = 4e-74
Identities = 124/129 (96%), Positives = 127/129 (98%)
Frame = +2
Query: 47 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 226
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 406
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 407 TQIMFETXN 433
TQIMFET N
Sbjct: 121 TQIMFETFN 129
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 273 bits (670), Expect = 4e-74
Identities = 124/127 (97%), Positives = 126/127 (99%)
Frame = +2
Query: 53 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 232
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 233 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 412
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 413 IMFETXN 433
IMFET N
Sbjct: 122 IMFETFN 128
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 272 bits (666), Expect = 1e-73
Identities = 123/127 (96%), Positives = 126/127 (99%)
Frame = +2
Query: 53 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 232
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 233 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 412
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 413 IMFETXN 433
IMFET N
Sbjct: 122 IMFETFN 128
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 186 bits (452), Expect = 9e-48
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +2
Query: 53 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 232
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 233 RGILTLKYPIEHGIITNWDDMEKIWHHTF 319
RGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 122 bits (294), Expect = 1e-28
Identities = 57/123 (46%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
Frame = +2
Query: 65 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 238
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 239 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 415
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 416 MFE 424
MFE
Sbjct: 127 MFE 129
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +2
Query: 299 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETXN 433
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+ N
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFN 2173
Score = 60.5 bits (140), Expect = 6e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +2
Query: 14 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 172
AS T+ F+ V +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2
Query: 71 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 172
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +2
Query: 8 IPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 187
IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 683 IPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Query: 188 --MGQKD-SYVGDEAQSKRGILTL 250
+ KD GD A +K G++ L
Sbjct: 742 DNVNVKDYKKYGDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 1e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 185 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 364
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.0 bits (124), Expect = 5e-08
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETXN 433
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -2
Query: 169 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 53
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 50.0 bits (114), Expect = 8e-07
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +2
Query: 347 EHPVLLTEAPLNPKANREKMTQIMFETXN 433
+HPVLLTEAPLNP+ NREK ++ FET N
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFN 154
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 62 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 241
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 242 LTLKY--PIEHGIITNWDDMEKIWHHTFYNE 328
L Y P + G + NWD ++IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.7 bits (71), Expect = 0.13
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 78 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRP 224
S P+ R TT+P P +PSWV + + W TW RP
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARP 80
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 42 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 146
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.41
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 248 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 400
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 0.72
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 42 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 146
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 0.95
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -2
Query: 409 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 230
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 229 AL 224
++
Sbjct: 214 SV 215
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 33 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 146
T S C T+L+R T+ APA P SPAT P R
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 27 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 152
K T ++ ATT + +T PA P +P TT P ++ P+
Sbjct: 63 KPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPT 104
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 27 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 152
K T ++ ATT + +T PA P P TT P ++ P+
Sbjct: 133 KPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPT 174
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 42 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 146
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 174 PWWRGRPTMDGKTARGASSPAKPALHMPEP 85
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 42 SRCATTMLLR-L*STMAPACARPVSPAT 122
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 42 SRCATTMLLR-L*STMAPACARPVSPAT 122
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 42 SRCATTMLLR-L*STMAPACARPVSPAT 122
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 44 KMCDDDVAALVVDNG-SGMCKAGFAGD 121
++CD D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 168 WRGRPTMDGKTARGASSPAKPALHMPEP 85
W + G T R PAKPAL++P P
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSP 99
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 144 GKTARGASSPAKPALHMPEP 85
G T R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 65 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 169
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 42 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 146
S C T+++R T+ APA P SPAT P R
Sbjct: 51 SSCLATLVVRPLETIPAPAPTTPTSPATPASGPPIR 86
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 42 SRCATTMLLR-L*STMAPACARPVSPAT 122
S C T L+R L +T APA P SPAT
Sbjct: 523 SSCLATFLVRTLETTPAPAPTTPTSPAT 550
>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 26.6 bits (56), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 40 VQDVRRRCCCACSRQW 87
V+D+ CCAC R+W
Sbjct: 108 VKDILSSVCCACPRRW 123
>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2032
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 247 SEDTSLALGLVTHVGVFLAHTDHHALVARATHD 149
S DT+ L LV+HVG + A D L HD
Sbjct: 1835 SRDTTCRLWLVSHVGGWAADVDKSPLQTLYGHD 1867
>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 211
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 42 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 146
S C T+L+R L + APA P SPAT A R
Sbjct: 148 SSCLATLLVRPLETAPAPAPTTPTSPATPASAAPIR 183
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 66 LRL*STMAPACARPVSPATTRPAP 137
L+L ST+ P+ P++PA P P
Sbjct: 185 LQLLSTLIPSTTAPINPAAINPTP 208
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 261 MGYFRVRIPLLLWASSPT*ESFWPIPTITP 172
MGY ++ P +W + + P PT+TP
Sbjct: 363 MGYVVIKAPYPVWTLLSSTPTITPTPTVTP 392
>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
Length = 522
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 18 PQHKHTQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 146
P T S C +L+R T+ APA P SPAT P R
Sbjct: 405 PLSAKTIVSSCLAPLLVRPLETIPAPAPTTPTSPATPASGPPIR 448
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,433
Number of Sequences: 59808
Number of extensions: 307846
Number of successful extensions: 1042
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -