Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32110
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 140 1e-34
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 42 7e-05
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 36 0.004
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.24
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 2.9
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.8
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 6.7
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.7
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 6.7
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 25 8.9
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 8.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 140 bits (339), Expect = 1e-34
Identities = 73/105 (69%), Positives = 83/105 (79%), Gaps = 3/105 (2%)
Frame = +3
Query: 210 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLFRGQPVLDS 380
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGL RG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 381 GSPIRIPVGAETLGRXINVIGEPIDERGPIPTDKTAAIHAEAXXF 515
GSPI IPVG TLGR +NVIGEP+DERGPI K + IHA+A F
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSF 170
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 41.5 bits (93), Expect = 7e-05
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 291 VAQHLGENTVRTIAMDGTEGLFRGQPVLDSGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
+A +L +TV + + G+ V + + +PVG LGR ++ +G PID +GPI
Sbjct: 90 MALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPI 149
Query: 471 PTDKTAAIHAEA 506
T + + +A
Sbjct: 150 KTTERRRVQLKA 161
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 VLEVAQHLGENTVRTIAMDGTEGLFRGQPVLD-SGSPIRIPVGAETLGRXINVIGEPIDE 458
VLEVA H V +GT G+ + +D +G +RIPV + LGR N G PID
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117
Query: 459 RGP 467
+GP
Sbjct: 118 KGP 120
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 466 GPRSSIGSPITLXMRPRVSA-PTGIRMGEPESSTGCPRNKPSVPSM 332
G R++ G+P + R+++ PT I PES NK S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 91 NPFQNVEKSLQSMPXXXGTMLLNLQEKAKVRLLPLSV 201
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -1
Query: 474 WGWDRARQSVXRLH*XCVR-GFQLPPGY 394
W W+ R+ + LH +R F PP Y
Sbjct: 154 WSWEEERRRIWELHSPELRASFSTPPSY 181
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 267 RSPRLVLEVAQHLGENTVRTIAMD 338
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 406 PTGIRMGEPESSTGCPRNKPSVPSMAMV 323
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 457 SSIGSPITLXMRPRVSAPTGIRMGEPESSTGCPRNKP-SVPSMAMVRT-VFSP 305
S IG P T + P G+ P S+ PR+K ++ ++VRT ++ P
Sbjct: 149 SKIGPPSTSHFQILADTPRGLVPLLPPPSSSIPRSKAVTIEDPSIVRTNIYDP 201
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = +3
Query: 219 FEDNLPPILNALEVQNRSPRLV-------LEVAQHLGENTVRTIAMDGTEGLFRGQPVLD 377
FE N+ + NR P + LEV +HLGE +++ +F + +
Sbjct: 37 FESNVEAFMEQCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVKHRNIFMARKTVY 96
Query: 378 SGSPIRI 398
GS ++
Sbjct: 97 VGSDSKL 103
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 340 VLKAYSVGNLYSTLAHPFVSRWELK 414
+L YS+G ++ L P + +W K
Sbjct: 366 ILGKYSIGCMFRELEEPLLKKWRWK 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,304
Number of Sequences: 5004
Number of extensions: 39873
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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