Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32110
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   10.0 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   10.0 

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 30  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 128
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 21  FLKMLGAISRVGSGILAVKSVAEKSLSEC 107
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 30  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 128
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 RSPRLVLEVAQHLGENTVRTIAMDGTE 347
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 353 IPWATCTRLWLT 388
           +PW +C   W T
Sbjct: 96  LPWGSCNNYWNT 107


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 336 DGTEGLFRGQPVLDSGSPI 392
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 353 IPWATCTRLWLT 388
           +PW TC   W T
Sbjct: 134 LPWRTCGNPWNT 145


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 353 IPWATCTRLWLT 388
           +PW TC   W T
Sbjct: 187 LPWRTCGNPWNT 198


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 290 LKYEAGRSILHLKGI*NRRQVIFELHIYH 204
           L+    + ++HLK I +   ++   +IYH
Sbjct: 100 LRDSVTKYLIHLKEIEDTEPILLIAYIYH 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,548
Number of Sequences: 438
Number of extensions: 2704
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)