Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32110
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 133 8e-32
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 133 8e-32
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 133 8e-32
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 39 0.002
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 33 0.11
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 33 0.11
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 33 0.15
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 33 0.15
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 33 0.15
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.1
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 29 1.4
At1g10540.1 68414.m01187 xanthine/uracil permease family protein... 29 1.9
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 5.7
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 27 5.7
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 27 5.7
At3g62640.1 68416.m07036 expressed protein 27 7.5
At2g33100.1 68415.m04058 cellulose synthase family protein simil... 27 9.9
At1g51910.1 68414.m05851 protein kinase family protein contains ... 27 9.9
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 133 bits (321), Expect = 8e-32
Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Frame = +3
Query: 210 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLFRGQPVLDSG 383
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGL RG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 384 SPIRIPVGAETLGRXINVIGEPIDERGPIPTDKTAAIHAEA 506
+PI +PVG TLGR +NV+GEPIDERG I T+ IH +A
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDA 195
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 133 bits (321), Expect = 8e-32
Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Frame = +3
Query: 210 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLFRGQPVLDSG 383
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGL RG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 384 SPIRIPVGAETLGRXINVIGEPIDERGPIPTDKTAAIHAEA 506
+PI +PVG TLGR +NV+GEPIDERG I T+ IH +A
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDA 198
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 133 bits (321), Expect = 8e-32
Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Frame = +3
Query: 210 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLFRGQPVLDSG 383
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGL RG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 384 SPIRIPVGAETLGRXINVIGEPIDERGPIPTDKTAAIHAEA 506
+PI +PVG TLGR +NV+GEPIDERG I T+ IH +A
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDA 195
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 291 VAQHLGENTVRTIAMDGTEGLFRGQPVLDSGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
+A +L V + G + G V +GS + +P G LGR ++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 471 PTDKTAAIHAEA 506
+ + +A
Sbjct: 394 SDHEQRRVEVKA 405
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLFRGQPVLD-SGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
GE V + +GT G+ + +G ++ PV + LGR N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLFRGQPVLD-SGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
GE V + +GT G+ + +G ++ PV + LGR N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLF-RGQPVLDSGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
GE V + +GT G+ + V +G ++ PV + LGR N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLF-RGQPVLDSGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
GE V + +GT G+ + V +G ++ PV + LGR N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLF-RGQPVLDSGSPIRIPVGAETLGRXINVIGEPIDERGPI 470
GE V + +GT G+ + V +G ++ PV + LGR N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 315 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 199
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 225 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGL 353
+NLP + + + R +LE A GE T RT A+D EG+
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGI 70
>At1g10540.1 68414.m01187 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 539
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 304 WVRTQFGPLPWTVLKAYSVGNLYSTLAHPFVSRWELKPSDAXSM*SXNRLTSAVPSPPT 480
W+R P+ W ++ G++++ +A FVS E + + +R SA P PP+
Sbjct: 275 WIRVPH-PIQWGGAPTFNAGDIFAMMAASFVSLVE----STGTYIAVSRYASATPIPPS 328
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 315 CSHPNVGLPQVRGGEIDFAPQGHLESEA 232
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 399 GYEWVSQSRVQVAHGISLQYRPWQ 328
GY W + +AHG+ + PWQ
Sbjct: 275 GYSWSKSYSISLAHGVGFSW-PWQ 297
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 455 VNRFXDY--IDXASEGFSSHRDTNG*ARVEYRLPTE*AFSTVHGNG 324
VNR DY ID + +GF S NG + + +LPT+ A T NG
Sbjct: 85 VNRV-DYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -3
Query: 415 VSAPTGIRMGEPESSTGCPRNKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 236
V T + P+S P P S + RT +P + T+R R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 235 GRLSS 221
G++ S
Sbjct: 87 GKVKS 91
>At2g33100.1 68415.m04058 cellulose synthase family protein similar
to gi:2827143 from Arabidopsis thaliana (Ath-B)
Length = 1036
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 397 IRMGEPESSTGCPRNKPSVPSMAMVRTVFSPKCWATSSTRRGDR 266
++ G P + PR P++A V S CW +T GDR
Sbjct: 689 VKNGRPPGALLLPRPPLDAPTVAEAIAVIS--CWYEDNTEWGDR 730
>At1g51910.1 68414.m05851 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 876
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 231 LPPILNALEVQNRSPRLVLEVAQ 299
LPP++NALEV L+LE Q
Sbjct: 343 LPPLINALEVYTLVENLLLETYQ 365
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,798
Number of Sequences: 28952
Number of extensions: 224049
Number of successful extensions: 553
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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