Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32098
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    30   0.18 
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    27   2.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   2.9  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   5.1  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   5.1  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   5.1  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   6.7  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   6.7  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 419 HNPVLRLHXLNLSREFXSLARGXGDL--RNRFTLSMVSSLVSEVRN 288
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 502 VKKNXQKNMAVSIKLXTSNXRMWXMLRHTILY 407
           +KKN    +++S+   T N  +  ++RH +LY
Sbjct: 155 LKKNRVDGLSLSMHFSTGNYSLPVLIRHVLLY 186


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 317  VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQLTS 183
            V SL ++  +  R A  V   TVA    +N+ RL VV++SLL + S
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLS 1333


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 132 VAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 239
           +A    F+  NG+ ++    + EAL   +K H++ A
Sbjct: 64  IAMKITFDLINGVYKTVPDRVPEALVSTSKKHLVAA 99


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 180 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 290
           ETG   E  D++    V+V  +   +    DGKP  I
Sbjct: 85  ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 332 FTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLL-QLT 186
           F+   ++ L   + +G  +AVS++  + ++   N+ +L  ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 101 VRSEFDASPDGSLQLQFRDFQRHRA*RNW*AEGGSRRRQQASRYCCCAWKLQLH 262
           V  E  A+  G+ + Q   ++ +R  R W  E  +   +  S++ CC W   +H
Sbjct: 533 VSIERSAARSGTRRSQGNPYEGYRTRRKWTDEEENELYEMISQHGCC-WSKIIH 585


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 192 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 314
           LKE  ++DN P     ++ ++ Y N +G  E ++ F    G
Sbjct: 76  LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +3

Query: 135 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 290
           A   N    + ++      +++++D   +PHV+VA  G  +        ETI
Sbjct: 97  ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,020
Number of Sequences: 5004
Number of extensions: 28446
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)