Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32098
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    60   1e-11
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   10.0 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   10.0 

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 60.1 bits (139), Expect = 1e-11
 Identities = 33/68 (48%), Positives = 42/68 (61%)
 Frame = +3

Query: 138 YNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETGY 317
           Y  NFETSNGI   E+G+ K+    DN+  V+   +GS SYT  DG+  +ITY ADE G+
Sbjct: 42  YINNFETSNGISHQESGQPKQV---DNETPVVS--QGSDSYTAPDGQQVSITYVADENGF 96

Query: 318 HAQGESIP 341
             QG  IP
Sbjct: 97  QVQGSHIP 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 156 TSNGIVRSETGELKEAL 206
           TS G  R  TGE+KEA+
Sbjct: 403 TSKGEYRMSTGEMKEAI 419


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 274 ANLKPLRTSLTRLDTMLRVNLFLRS 348
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 274 ANLKPLRTSLTRLDTMLRVNLFLRS 348
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = +1

Query: 136 LTTTISRLPTASCVAKLV 189
           +T ++  +PT +C+A+++
Sbjct: 385 ITESLRLIPTTTCIARIL 402


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 NMAVSIKLXTSNXRMWXMLRHT 416
           N+A+S+ L  +  ++W   R T
Sbjct: 40  NLALSLSLTETQVKIWFQNRRT 61


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 73  GSDDGSHKGESYNDD 29
           GSD  +HK E  ND+
Sbjct: 310 GSDKENHKTEEPNDE 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,169
Number of Sequences: 438
Number of extensions: 2167
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)