Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32097
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    39   5e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.3  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   6.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   8.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.9  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 30/136 (22%), Positives = 55/136 (40%)
 Frame = +1

Query: 82  AFSIYDFEXKGKIDAFNLGDLLRALNSNPXXXXXXXXXXXXXXXXXXXXXXXFLXIYSQA 261
           AFS++D    G+I   ++GDLLRA   NP                       FL + ++ 
Sbjct: 11  AFSLFDRHGTGRIPKTSIGDLLRACGQNP---TLAEITEIESTLPAEVDMEQFLQVLNRP 67

Query: 262 KKDKDQGAXEDFLECLKLYDKNENGLMXXXXXXXXXXXXXXXXDDSEVAEVTKDCMDPED 441
                 G  E+F++  +++DK+  G++                 + E+ E+ K       
Sbjct: 68  NGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV---PV 124

Query: 442 DDXMIPYAAFLKXVMA 489
            D M+ Y  F++ ++A
Sbjct: 125 KDGMVNYHDFVQMILA 140


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 55  RNDVEXASFAFSIYDFEXKGKIDAFNLGDLLRALNSN 165
           R+ +E    AF ++D +  GKI   NL  + + LN N
Sbjct: 106 RDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNEN 142


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 118 SYLCXQSRKLRRRKTPFQRRSLLRS 44
           S L  Q RKLR +K   +R+SLL S
Sbjct: 218 SKLATQDRKLRMQKKSTERKSLLVS 242


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 459 LRSIPEEXHGVEDITTRH 512
           LR +P+E +G++D+  RH
Sbjct: 214 LRMLPKEHYGLKDLEIRH 231


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 483  DXLQECCVGDHAVIVFRVH 427
            D L  C V DH V VFR H
Sbjct: 983  DSLLACLVRDHVVKVFRRH 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,156
Number of Sequences: 5004
Number of extensions: 25612
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)