Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32096
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   10.0 

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 GSGSAHPWSSVSWTESLTDAA 315
           G  S+H   S SWT+   DAA
Sbjct: 399 GQSSSHHHGSKSWTQEDMDAA 419


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 504 GSVRRMNMSRWCRVVLRTWRAAPQSEP 424
           G VR + + +  R+VL  ++   +SEP
Sbjct: 311 GIVRSLVLDKLARIVLLNFQEERRSEP 337


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -2

Query: 266 ADPDPHHVMRHIRVRHESSYRPRCRTVNQFSLREPRHVIDVRDM 135
           A P P  +++ +  + E+ +R     + +  + E + V+DV+D+
Sbjct: 254 AGPTPGTILKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDV 297


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -2

Query: 266 ADPDPHHVMRHIRVRHESSYRPRCRTVNQFSLREPRHVIDVRDM 135
           A P P  +++ +  + E+ +R     + +  + E + V+DV+D+
Sbjct: 169 AGPTPGTILKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDV 212


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -2

Query: 266 ADPDPHHVMRHIRVRHESSYRPRCRTVNQFSLREPRHVIDVRDM 135
           A P P  +++ +  + E+ +R     + +  + E + V+DV+D+
Sbjct: 488 AGPTPGTILKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDV 531


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = +1

Query: 247 W*GSGSAHPWSSVSWTES 300
           W      H W ++ WT+S
Sbjct: 85  WTSVMELHSWMTLMWTDS 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,344
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)