Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32095
         (404 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   185   3e-46

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  185 bits (450), Expect = 3e-46
 Identities = 93/134 (69%), Positives = 93/134 (69%)
 Frame = +2

Query: 2   VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPXRYDPSRDNSGRYI 181
           VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADP RYDPSRDNSGRYI
Sbjct: 3   VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYI 62

Query: 182 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLXKYLGDAYKGSXIVPLPVX 361
           P                                    KEDL KYLGDAYKGS IVPLPV 
Sbjct: 63  PDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYKGSSIVPLPVV 122

Query: 362 KPTIAVPVTPTYVA 403
           KPTI VPVTPTYVA
Sbjct: 123 KPTIPVPVTPTYVA 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,405,398
Number of Sequences: 1657284
Number of extensions: 4129126
Number of successful extensions: 12072
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12066
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)