BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32095 (404 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 1.1 SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 3.4 SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 25 5.9 SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 5.9 >SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 282 Score = 27.1 bits (57), Expect = 1.1 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 113 KPGRYVADPXRYDPSRDN 166 KPG YV+D Y P +DN Sbjct: 235 KPGSYVSDRASYTPQQDN 252 >SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 526 Score = 25.4 bits (53), Expect = 3.4 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 158 GWGHNGXDQLHSGLAYRRMEKQ*SK 84 G+GH G LH +A R+ +K+ K Sbjct: 440 GFGHMGDGNLHLNIAVRQFDKRVEK 464 >SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase|Schizosaccharomyces pombe|chr 2|||Manual Length = 362 Score = 24.6 bits (51), Expect = 5.9 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +2 Query: 20 LSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYV 130 ++ T +A+ GK TP + Y ++ FVY G ++ Sbjct: 255 MTRTRLIASGPGKETPLETFSYYGPLNFFVYNAGYHI 291 >SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 24.6 bits (51), Expect = 5.9 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -2 Query: 397 VCGCDWHGNGRLXDGQGNNXGSLV 326 VCG +W+ N L GN+ +V Sbjct: 377 VCGLEWNSNENLLASGGNDNALMV 400 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,179,613 Number of Sequences: 5004 Number of extensions: 15271 Number of successful extensions: 54 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 54 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 138190552 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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