Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32093
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   0.48 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   5.9  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    24   5.9  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 186 KPFFAFLALEASSMRLRTSARLRSISACLAFFASSTAI 73
           K FF  L  E+  +RL+T+  + S+  CL    +S A+
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCLDTTPNSFAV 362


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 6   G*TIS*GHLLILAVGHPKPTQQQWRLMKRRRPNRPKSTASALRC 137
           G T+S   LL++ + + KP   Q++    +R +R  S  ++L C
Sbjct: 270 GVTVSLSDLLLIILKYDKPFVTQYKEKYFKRVSRMISRLTSLTC 313


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 87  KRRRPNRPKSTASAL 131
           +RR PNRPK +A  L
Sbjct: 171 RRRTPNRPKKSAEEL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,580
Number of Sequences: 5004
Number of extensions: 8060
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)