Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32093
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   1.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    20   5.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    20   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 8   LNHLVGPSSNSCSRTP*TNTTTMAVDEAKKAKQAEIDRKRAEVR 139
           +N+ +GP +    +         A+DE K   + + +R R+ VR
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPVR 340


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 88  SEEGQTGRNR 117
           +EEGQ+GR+R
Sbjct: 23  TEEGQSGRSR 32


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 88  SEEGQTGRNR 117
           +EEGQ+GR+R
Sbjct: 23  TEEGQSGRSR 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 30   LLILAVGHPKPTQQQW 77
            ++   V H K  QQ+W
Sbjct: 1491 MIYFVVEHKKKNQQEW 1506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,950
Number of Sequences: 438
Number of extensions: 626
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)