Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32093
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03660.1 68418.m00325 expressed protein low similarity to out...    27   1.9  
At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont...    27   3.4  
At5g55860.1 68418.m06963 expressed protein contains Pfam profile...    25   7.8  
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si...    25   7.8  
At4g24330.1 68417.m03492 expressed protein hypothetical protein ...    25   7.8  

>At5g03660.1 68418.m00325 expressed protein low similarity to outer
           surface protein F [Borrelia burgdorferi] GI:466482;
           contains Pfam profile PF04949: Family of unknown
           function (DUF662)
          Length = 173

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 71  TMAVDEAKKAKQAEIDRKRAEVRKRME 151
           +M    A KAK+ EI++K+ E+R+R++
Sbjct: 40  SMKALSAFKAKEEEIEKKKMEIRERVQ 66


>At3g17520.1 68416.m02238 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to PIR|S04045|S04045 embryonic
           abundant protein D-29 [Gossypium hirsutum]; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 298

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 59  TNTTTMAVDEAKKAKQAEIDRKRAEVRKRME 151
           T+TTT   D+A +A Q   D K A  RK  E
Sbjct: 59  THTTTTVQDDAWRASQKAEDAKEAAKRKAEE 89


>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 83  DEAKKAKQAEIDRKRAEVRKRMEEAS 160
           D AKKA + E+ R R   +K+ EEA+
Sbjct: 549 DAAKKAVEGELRRWRERDQKKAEEAA 574


>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
           similar to 17.9 kDa heat-shock protein [Helianthus
           annuus] GI:11990130; contains Pfam profile PF00011:
           Hsp20/alpha crystallin family; supporting cDNA
           gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
           small heat shock-like protein (RTM2) GI:7407072, small
           heat shock-like protein [Arabidopsis thaliana]
           GI:7407073
          Length = 366

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 83  DEAKKAKQAEIDRKRAEVRKRMEEA 157
           +EAK+ K+  ++ K A +RK  EEA
Sbjct: 146 EEAKQMKKQLLEEKEALIRKLQEEA 170


>At4g24330.1 68417.m03492 expressed protein hypothetical protein -
           Caenorhabditis elegans,PID:e1350884
          Length = 478

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 77  AVDEAKKAKQAEIDRKRAEVRKRMEEA 157
           A  E +  +Q  + RK+AE +K +EEA
Sbjct: 418 AYKELENVRQEALQRKKAEKKKILEEA 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,063,315
Number of Sequences: 28952
Number of extensions: 45857
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)