Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32088
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q961Y1 Cluster: Alpha-crystallin; n=1; Galleria mellone...    57   2e-07
UniRef50_Q4SPL7 Cluster: Chromosome 16 SCAF14537, whole genome s...    33   2.9  
UniRef50_UPI0000E808D9 Cluster: PREDICTED: hypothetical protein;...    33   3.9  
UniRef50_UPI000065D0E6 Cluster: Homolog of Homo sapiens "Splice ...    32   6.8  
UniRef50_Q2JAI0 Cluster: DNA methylase N-4/N-6 precursor; n=1; F...    32   6.8  
UniRef50_Q5ZAY7 Cluster: Putative uncharacterized protein P0413G...    32   6.8  
UniRef50_Q6AR79 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_Q961Y1 Cluster: Alpha-crystallin; n=1; Galleria
           mellonella|Rep: Alpha-crystallin - Galleria mellonella
           (Wax moth)
          Length = 239

 Score = 57.2 bits (132), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +2

Query: 245 CNDYENAGTREMFGTYSYALXIPLPGVTADDIIXKSKYRYVYITXRRPLXLKP-YTEIKR 421
           C D  N  ++E+F T  Y + + L     + ++ K KYR +YI   +    K  Y E++ 
Sbjct: 61  CTDNNNNRSKEIFKTDEYTIQVSLEDYAKESVVVKIKYRVMYIYAEKKDESKSNYFELRV 120

Query: 422 LPKLVDVTQAYWEYEDNEL 478
           LP++VDV +A W Y D +L
Sbjct: 121 LPEIVDVHKATWNYNDGDL 139


>UniRef50_Q4SPL7 Cluster: Chromosome 16 SCAF14537, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 16 SCAF14537, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 573

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 43  ACCHHGR--SHKCRHERPSKCRHGGKL-GCKGGRWSLTPRLQEIRKGYKRTTNRR 198
           AC  H    S  CR+ RPS+ R  G+  G  GG W+     Q  R+G +++ +RR
Sbjct: 480 ACVFHDSRSSRTCRYSRPSRTRRQGRTPGSPGGSWT-----QRRRRGTEQSLSRR 529


>UniRef50_UPI0000E808D9 Cluster: PREDICTED: hypothetical protein;
           n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 163

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 58  GRSHKCRHERPSKCRHGGKLGCKGGRWSLTPRLQEIRKGYKRTTNRRPEQGPEANRRPSS 237
           GR+   R E  + CR  G+      R  + P L E+ +G  R+  R P +     RRP  
Sbjct: 5   GRTRAARSEPLAPCRPPGRAAAAPLRAGIAPGLSEVARG--RSGARPPRRAARRTRRPGP 62

Query: 238 EAVQ 249
            A +
Sbjct: 63  HATR 66


>UniRef50_UPI000065D0E6 Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Collagen alpha 1; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Collagen alpha 1 - Takifugu rubripes
          Length = 523

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 40  VACCHHGRSHKC-RHERPSKC-RHGGKLGCKGGRWS 141
           V   H  RS +  R+ RPS+  RHGG  G  GG WS
Sbjct: 444 VCVFHDSRSSRASRYSRPSRAGRHGGTPGQAGGSWS 479


>UniRef50_Q2JAI0 Cluster: DNA methylase N-4/N-6 precursor; n=1;
           Frankia sp. CcI3|Rep: DNA methylase N-4/N-6 precursor -
           Frankia sp. (strain CcI3)
          Length = 330

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 118 RVYHHDGTCWASRDDIY-GNARGG 50
           RV H DGTCW +  D Y G A GG
Sbjct: 77  RVLHPDGTCWLNLGDSYAGKANGG 100


>UniRef50_Q5ZAY7 Cluster: Putative uncharacterized protein
           P0413G02.14; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0413G02.14 - Oryza sativa subsp. japonica (Rice)
          Length = 212

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 58  GRSHKCRHERPSKCRHGGKLGCKGGRWSLTPRLQEIRKGYKRTT-NRRPEQGPEANRRPS 234
           G++  CRH R S     G+L  +  RW   P    +R G + +T  RR  Q P A+ R +
Sbjct: 108 GQALPCRHGRRSVEAARGQLPVQTSRWMSPPPRAGLRLGGRPSTPPRRQAQRPSASTRSA 167

Query: 235 SEAV 246
            + +
Sbjct: 168 GQCL 171


>UniRef50_Q6AR79 Cluster: Putative uncharacterized protein; n=1;
           Desulfotalea psychrophila|Rep: Putative uncharacterized
           protein - Desulfotalea psychrophila
          Length = 136

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 151 RLQEIRKGYKRTTNRRPEQGPEANRRPSSEA 243
           R+Q  RKG+K+TTN      P A+ RP+S A
Sbjct: 50  RIQYTRKGHKKTTNSGGMYPPFASERPNSAA 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,393,277
Number of Sequences: 1657284
Number of extensions: 7908314
Number of successful extensions: 21965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21951
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)