Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32088
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    29   2.9  
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791...    28   5.1  
04_04_1322 + 32640414-32642327                                         27   6.8  
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460...    27   8.9  
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329...    27   8.9  
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537...    27   8.9  

>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 52  HHGRSHKCRHERPSKCRHGGKLGCKGGRWSLTPRLQEIRKGYKRTTNRRPEQGPEANRRP 231
           H+   H  RH    + R GG+    GGR  L+      R   +    RRP +G   +R P
Sbjct: 31  HYHHRHPSRHRDSERRRDGGR---SGGR-ELSNGYSHRRDSPRPPPRRRPSEGRTEDREP 86


>01_03_0205 +
           13777918-13778015,13778402-13778624,13779022-13779198,
           13779277-13779437,13779520-13780519,13780923-13781069,
           13781149-13781376,13781471-13781628,13781807-13782161
          Length = 848

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 380 RRPLXLKPYTEIKRLPKLVDVTQAYWEYEDNEL 478
           RRP   K   + +  PKLV++T   W+Y  N L
Sbjct: 357 RRPPACKRAKDQESYPKLVELTLNNWDYSSNLL 389


>04_04_1322 + 32640414-32642327
          Length = 637

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 46  CCHHGRSHKCRHERPSKCRHGGKLGCK 126
           C  HG   +C++   SK   GG + CK
Sbjct: 352 CISHGGGRRCQYPNCSKGAQGGTMFCK 378


>09_06_0201 -
           21545189-21545494,21545593-21545743,21545835-21546072,
           21546158-21546365,21546446-21546639,21546721-21546819,
           21546886-21546922,21548242-21548775
          Length = 588

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 245 CNDYENAGTREMFGTYSY 298
           C++ +NA TR + GTY Y
Sbjct: 422 CDNQQNANTRRVVGTYGY 439


>04_03_0669 +
           18531419-18531820,18532589-18532690,18532882-18532948,
           18533530-18533708,18533792-18534052,18535324-18535407,
           18535517-18535564,18535654-18535718,18536849-18536897,
           18538132-18538372,18539623-18539744,18539942-18540022,
           18540094-18540168,18540408-18540550,18540662-18540812,
           18540915-18541097
          Length = 750

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 349 FXDDIISGNSRERYXQRVTVGPEHFTSARVFIIVAQPPKTVVDSLQVP-AQVFD*LFVYI 173
           F DDI   NSR    Q ++ G E+  +A   +IV      V   L  P A   +  F+  
Sbjct: 601 FIDDIAVANSRATTQQLMSTGNEN--NAVKILIVDVDSSDVSSGLSCPHANFVEDSFLLA 658

Query: 172 LSVFLEAGAL 143
           +  FL+ G L
Sbjct: 659 VKKFLDEGGL 668


>03_05_1137 +
           30652967-30653183,30653281-30653485,30653696-30653786,
           30653904-30654046,30654186-30654429,30654536-30654640,
           30654985-30655167,30655255-30655459,30655552-30656036
          Length = 625

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 LXIPLPGVTADDIIXKSKYRYVYITXRRPLXLKPY 406
           L IP PG T    + KS    V +   RPL ++PY
Sbjct: 520 LTIPEPGPTVIQTVCKSIKCVVVLISGRPLVVEPY 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,026
Number of Sequences: 37544
Number of extensions: 228430
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)