Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32088
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 28   5.3  
SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               27   6.9  
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)                27   6.9  
SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068)          27   6.9  
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 210 T*SESTTVFGGC-ATIMKTRALVKCSGPTVTRXSYLSLELPLMI 338
           T ++ TTVF     T+ +  A+V C  PT    S LSL L +++
Sbjct: 316 TTAQVTTVFTSFFLTLERYLAIVHCDNPTARLSSKLSLRLSILV 359


>SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 SYALXIPLPGVTADDIIXKSKYR 361
           SY +  PL G+TADDI  K K +
Sbjct: 95  SYFIRTPLAGLTADDIPLKGKQK 117


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 52  HHGRSHKCRHERPS 93
           HH R H CRH  PS
Sbjct: 221 HHSRHHHCRHPAPS 234


>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
          Length = 633

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 208 PAQVFD*LFVYILSVFLEAGALMTTCPLCSRVYHHD 101
           PA+ +D L  Y   V      ++  C LC+RVYH D
Sbjct: 492 PAESWDMLCYYCNQVPC-GNQILNPCRLCTRVYHSD 526


>SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068)
          Length = 814

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 287 SRTFHECPRFHNRCTASEDGRRFASGPCSGLRL 189
           +R FHEC R   R T     R F SG  +  R+
Sbjct: 160 ARGFHECTRIGERSTQGFSARVFVSGLRAAYRI 192


>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 154 LQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRG-HS*NVRDLQLRA 303
           L  I KGY  + N +P  GP+A    S++ VQ    RG  +  VRD+  R+
Sbjct: 287 LTSIEKGYTSSYNAKPVAGPKAWMVYSADPVQSGKLRGCPAGPVRDVPARS 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,060
Number of Sequences: 59808
Number of extensions: 262579
Number of successful extensions: 791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)