Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32088
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   8.0  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   8.0  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   8.0  

>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 145 TPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRGHS 273
           T RLQ IR+    T  R   +GP ++  PS  A     + GHS
Sbjct: 757 THRLQSIRRSLADTAERAETEGPSSSTGPSISAPPIPSRPGHS 799


>U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical
           protein C33G8.10 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 40  VAC-CHH--GRSHKCRHERPSKCRHGGKLGCK 126
           ++C C H    SH CRH R  KC   G + CK
Sbjct: 38  ISCTCKHRLATSHPCRHCRMLKCMATGMVKCK 69


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 295 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 194
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 295 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 194
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 295 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 194
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 295 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 194
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,835
Number of Sequences: 27780
Number of extensions: 183994
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)