Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32086
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical ...    29   2.6  

>Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 67  AYSKQT-NKQIFPLYNISIDYRNS*MAISLVRNTAFALDLKSLRL 198
           +Y+ QT N     +YN+ I +    MAIS++ NT   + L++L +
Sbjct: 163 SYTLQTPNMPFIEIYNVLIPFMCICMAISILSNTTSVIFLRNLNI 207


>Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical
           protein C32C4.1 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 235 ILIRII-LIQHPHAFL*NNFFTSI-AFEHTLLSRLTNLNFLSNNCYR*VIFFLAISY 399
           +++R++ +++    F    + TS+  F HTL S +T L+ LS      ++FF  I Y
Sbjct: 360 LVVRVLRVLRMARVFKLARYSTSLQTFGHTLQSSITELSMLSMFLITGIVFFSTIMY 416


>AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 67  AYSKQT-NKQIFPLYNISIDYRNS*MAISLVRNTAFALDLKSLRL 198
           +Y+ QT N     +YN+ I +    MAIS++ NT   + L++L +
Sbjct: 163 SYTLQTPNMPFIEIYNVLIPFMCICMAISILSNTTSVIFLRNLNI 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,078,237
Number of Sequences: 27780
Number of extensions: 174493
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)