Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32086
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   10.0 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   10.0 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   10.0 

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 276 FMKQFFHVYC 305
           F +QFFH YC
Sbjct: 422 FFQQFFHCYC 431


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 344 FKFVSLLNNVCSNAIDVKKLFH 279
           F + SLL  VC N +  K+  H
Sbjct: 373 FIYASLLEFVCVNYVGRKRPMH 394


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 344 FKFVSLLNNVCSNAIDVKKLFH 279
           F + SLL  VC N +  K+  H
Sbjct: 342 FIYASLLEFVCVNYVGRKRPMH 363


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 344 FKFVSLLNNVCSNAIDVKKLFH 279
           F + SLL  VC N +  K+  H
Sbjct: 393 FIYASLLEFVCVNYVGRKRPMH 414


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 344 FKFVSLLNNVCSNAIDVKKLFH 279
           F + SLL  VC N +  K+  H
Sbjct: 342 FIYASLLEFVCVNYVGRKRPMH 363


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 59  VSEPIRNKQTNKSFLFII 112
           V +P+ N  T   FLF++
Sbjct: 55  VHDPVTNSDTYIGFLFVL 72


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 467 GLPPRTVFCAF 435
           G  PRT +CAF
Sbjct: 566 GKGPRTTYCAF 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,194
Number of Sequences: 438
Number of extensions: 2435
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)